Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq5966 194 2e-44
seq4328 120 4e-22
>seq5966
Length=19948154
Score = 194 bits (214), Expect = 2e-44
Identities = 249/341 (73%), Gaps = 2/341 (1%)
Strand=Plus/Plus
Query 83055 GGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGC 83114
||||||| |||||||||| || || | ||||| | || || ||||||| | ||
Sbjct 2823823 GGAGCAGCAGCTCGATGTCGTCCTGCAGTTTGATGGTCTCGAAGTGGCGGCTGTAGCGGC 2823882
Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174
| | ||| |||||| | ||||| | |||||||||||||||||||| ||||||||||
Sbjct 2823883 GGAAGGGGACGCCGTCGGGGCCCACGAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGC 2823942
Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234
||||||| || |||||| ||| ||| |||| | ||| |||| |||||||
Sbjct 2823943 GGCACACCGGCGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGAGGGGTCGTCGT 2824002
Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTG 83293
|| ||||| ||||||| ||||||||||| ||||| || || || | | |||||
Sbjct 2824003 GCGGGAAGGGCAGCGCCTCTCTCAGGAAGGCGAACAGCGGGTGAGCGCCCTTC-CCGTTC 2824061
Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353
||||||||||||||||| | | ||||| || | ||||||||| || || || |||| |
Sbjct 2824062 ACCTCGCACTTCTCGAACATGGTGAAGTTGGGTTTGAAGCCGTTGCCGGGCCGCACGTAC 2824121
Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
| ||| || ||| |||||| | || |||||| |||||
Sbjct 2824122 TCCAGCGAGCGCAGGATCTCCTCGTTGGTGGCGTTCTCCTG 2824162
>seq4328
Length=59825302
Score = 120 bits (132), Expect = 4e-22
Identities = 122/157 (78%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 83387 TTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT 83446
||| |||||| ||||||||||| || ||||| || ||||| ||||||| ||| | |
Sbjct 305761 TTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGTGGG--T 305704
Query 83447 AGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGAC 83506
|| || |||||||| ||| | ||| ||||| |||| |||||| | |||||||| |||
Sbjct 305703 AG-CGTGCCTGCAGCTGGTTGAGCTGGGTGTAATCCCTCACCGTGGTGCCTCAGAGCGAC 305645
Query 83507 GCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543
|| |||||||||||||| | ||||| || || ||||
Sbjct 305644 GCCACGTTCTCGATGAGGACCACCCGCCCGCGGAAGA 305608
Score = 100 bits (110), Expect = 3e-16
Identities = 188/268 (70%), Gaps = 14/268 (5%)
Strand=Plus/Minus
Query 83135 CCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCA 83194
||||||| ||||||||| |||||||||| | |||| ||| | ||| || ||| |
Sbjct 306084 CCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCGGAGCGCCTCACAGGGCTCCACACC 306025
Query 83195 ATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG--TCGTCGCTAGGCGCCGGCAGG---G 83249
| || |||| ||| || || ||| || || ||||| || || |||||| |
Sbjct 306024 AGGAAGCGGGGTTCGGCCATCAG-GTGGTC-TGCCTCGTCCACGGGGGCGGGCAGGTGGG 305967
Query 83250 CCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTCGCACTTCTC 83307
||| || ||| ||||||||| || || || |||| | |||| |||| ||||||||
Sbjct 305966 CCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCCTTCC--CGTTCACCTGGCACTTCTG 305912
Query 83308 GAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAA 83367
||| || | ||||| |||||||||||| ||| || || |||||||| ||| | |
Sbjct 305911 GAACAGGGTGAAGTTGGGCTCGAAGCCGCCCCCCGGCCGCACGTGCTTGAGGCAGTTGAG 305852
Query 83368 GATCTCGGCATTCTGGGCGTTTTCCTGG 83395
|||||| | || | |||| ||||||
Sbjct 305851 GATCTCCTCGTTGGTGCCGTTCTCCTGG 305824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608618156189000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |