Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq5966 194 2e-44 seq4328 120 4e-22 >seq5966 Length=19948154 Score = 194 bits (214), Expect = 2e-44 Identities = 249/341 (73%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 83055 GGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGC 83114 ||||||| |||||||||| || || | ||||| | || || ||||||| | || Sbjct 2823823 GGAGCAGCAGCTCGATGTCGTCCTGCAGTTTGATGGTCTCGAAGTGGCGGCTGTAGCGGC 2823882 Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 | | ||| |||||| | ||||| | |||||||||||||||||||| |||||||||| Sbjct 2823883 GGAAGGGGACGCCGTCGGGGCCCACGAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGC 2823942 Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234 ||||||| || |||||| ||| ||| |||| | ||| |||| ||||||| Sbjct 2823943 GGCACACCGGCGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGAGGGGTCGTCGT 2824002 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTG 83293 || ||||| ||||||| ||||||||||| ||||| || || || | | ||||| Sbjct 2824003 GCGGGAAGGGCAGCGCCTCTCTCAGGAAGGCGAACAGCGGGTGAGCGCCCTTC-CCGTTC 2824061 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 ||||||||||||||||| | | ||||| || | ||||||||| || || || |||| | Sbjct 2824062 ACCTCGCACTTCTCGAACATGGTGAAGTTGGGTTTGAAGCCGTTGCCGGGCCGCACGTAC 2824121 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | ||| || ||| |||||| | || |||||| ||||| Sbjct 2824122 TCCAGCGAGCGCAGGATCTCCTCGTTGGTGGCGTTCTCCTG 2824162 >seq4328 Length=59825302 Score = 120 bits (132), Expect = 4e-22 Identities = 122/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 83387 TTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT 83446 ||| |||||| ||||||||||| || ||||| || ||||| ||||||| ||| | | Sbjct 305761 TTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGTGGG--T 305704 Query 83447 AGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGAC 83506 || || |||||||| ||| | ||| ||||| |||| |||||| | |||||||| ||| Sbjct 305703 AG-CGTGCCTGCAGCTGGTTGAGCTGGGTGTAATCCCTCACCGTGGTGCCTCAGAGCGAC 305645 Query 83507 GCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 || |||||||||||||| | ||||| || || |||| Sbjct 305644 GCCACGTTCTCGATGAGGACCACCCGCCCGCGGAAGA 305608 Score = 100 bits (110), Expect = 3e-16 Identities = 188/268 (70%), Gaps = 14/268 (5%) Strand=Plus/Minus Query 83135 CCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCA 83194 ||||||| ||||||||| |||||||||| | |||| ||| | ||| || ||| | Sbjct 306084 CCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCGGAGCGCCTCACAGGGCTCCACACC 306025 Query 83195 ATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG--TCGTCGCTAGGCGCCGGCAGG---G 83249 | || |||| ||| || || ||| || || ||||| || || |||||| | Sbjct 306024 AGGAAGCGGGGTTCGGCCATCAG-GTGGTC-TGCCTCGTCCACGGGGGCGGGCAGGTGGG 305967 Query 83250 CCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTCGCACTTCTC 83307 ||| || ||| ||||||||| || || || |||| | |||| |||| |||||||| Sbjct 305966 CCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCCTTCC--CGTTCACCTGGCACTTCTG 305912 Query 83308 GAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAA 83367 ||| || | ||||| |||||||||||| ||| || || |||||||| ||| | | Sbjct 305911 GAACAGGGTGAAGTTGGGCTCGAAGCCGCCCCCCGGCCGCACGTGCTTGAGGCAGTTGAG 305852 Query 83368 GATCTCGGCATTCTGGGCGTTTTCCTGG 83395 |||||| | || | |||| |||||| Sbjct 305851 GATCTCCTCGTTGGTGCCGTTCTCCTGG 305824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608618156189000