Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 125 6e-24
seq6642 122 7e-23
>seq6387
Length=12762846
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||||| ||||||||||| || ||||| ||||| | ||| || | | ||
Sbjct 4540395 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 4540336
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || |||||||| || ||| | ||| ||||||||
Sbjct 4540335 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 4540276
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || |||| |||||| |||| ||| ||||||
Sbjct 4540275 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 4540216
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || || || || ||||| || |||||
Sbjct 4540215 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | ||| | |||||||||||| || ||||| ||||| | |||||| | ||||
Sbjct 4540167 AGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 4540108
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || || |||||||| || ||| | ||| ||||||||
Sbjct 4540107 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 4540048
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| || || | ||| ||||||| ||| ||| |||| ||| ||||||
Sbjct 4540047 TGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTC 4539988
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
||||| || | || || || || || ||||| |||
Sbjct 4539987 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTTG 4539952
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| |||| ||||||||||| || ||||| ||||| | |||||| | | ||
Sbjct 4540623 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 4540564
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || ||||| || || ||| | ||| ||||||||
Sbjct 4540563 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTGTCC 4540504
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || || | ||| ||| |||| ||| ||||||
Sbjct 4540503 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTC 4540444
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || || || || ||||| || |||||
Sbjct 4540443 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412
>seq6642
Length=9979828
Score = 122 bits (134), Expect = 7e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||||| ||||||||||| || ||||| ||||| | |||||| | ||||
Sbjct 6586160 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586101
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || | |||||||| || || | ||||||||||||
Sbjct 6586100 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 6586041
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || |||| |||||| || | ||| ||||||
Sbjct 6586040 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6585981
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
||||| || | || || ||||| || ||||| ||
Sbjct 6585980 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 6585946
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||||| ||||||||||| || ||||| ||||| | |||||| | ||||
Sbjct 6586844 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586785
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| |||| || |||||||| || || | |||||| |||||
Sbjct 6586784 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCC 6586725
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || |||| |||||| || | ||| ||||||
Sbjct 6586724 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6586665
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || || || || || |||||
Sbjct 6586664 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||||| |||||||| || || ||||| ||||| | |||||| | ||||
Sbjct 6586616 AGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586557
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || | |||||||| || || | |||||| |||||
Sbjct 6586556 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 6586497
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || |||| |||||| || | ||| ||||||
Sbjct 6586496 TGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6586437
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || || ||||| || || || |||||
Sbjct 6586436 TTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | ||||||| ||||| ||||||||||| || ||||| ||||| | |
Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | || |||||||| || || ||| | || | |||||||| || ||
Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 6586284
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||| || || |||||| ||||| | | | || |||| ||| ||
Sbjct 6586283 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACC 6586224
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| ||||||||||| || | || || ||||| || |||||
Sbjct 6586223 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422138390983100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |