Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6387 165 8e-36 seq6642 150 2e-31 seq2929 129 6e-25 seq1781 84.2 2e-11 >seq6387 Length=12762846 Score = 165 bits (182), Expect = 8e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| || Sbjct 4539953 AACATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCC 4540012 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||||| || || | ||||| |||||||| ||| | || Sbjct 4540013 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAT 4540072 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| ||| ||||| |||||||| |||| ||||||||| ||||||| Sbjct 4540073 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTAC 4540132 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || ||||| || ||||| | ||||| ||| Sbjct 4540133 AACATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTCAGGGGTGGC 4540183 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || ||||| ||| Sbjct 4540184 ATGCAGATCTTTGTGAAGACCTTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 4540243 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| ||| | || || Sbjct 4540244 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCA 4540302 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||| || ||||||||| Sbjct 4540303 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCCGACTACAA 4540362 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| |||||||| ||| ||||| ||||||| || Sbjct 4540363 CATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGG 4540410 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || || ||| ||| | Sbjct 4540412 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGC 4540471 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| ||| | || || Sbjct 4540472 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCA 4540530 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | || |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 4540531 ACAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 4540590 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| ||||| || ||| ||||| | ||||| || Sbjct 4540591 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 4540638 >seq6642 Length=9979828 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || ||| Sbjct 6586633 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6586692 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | |||||||| ||||| || | || ||| Sbjct 6586693 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAG 6586752 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 6586753 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 6586812 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| ||||| | ||||| ||| Sbjct 6586813 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAGGGGTGGC 6586860 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || || || ||||| ||||||||| |||| || || | Sbjct 6585945 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCC 6586004 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | | |||| || || | ||||| || ||||| || | || Sbjct 6586005 CAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGA 6586064 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | | |||| || ||||| |||||||| |||| ||||||||| ||||| Sbjct 6586065 TCAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA 6586124 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| |||||||| ||| ||||| ||||||| ||| Sbjct 6586125 CAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGGC 6586176 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || ||||| ||||||||| |||| || || ||| Sbjct 6586405 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6586464 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | |||||||| ||||| || | || ||| Sbjct 6586465 GACACAATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 6586524 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 6586525 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 6586584 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| |||||||| ||| |||| ||||||| ||| Sbjct 6586585 ATCCAGAAAGAGTCCACCCTGCATCTGGTGCTGCGTCTGAGGGGAGGC 6586632 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 6586177 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAACCCAGT 6586236 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || ||||| ||||| || | || ||| Sbjct 6586237 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGATCAG 6586296 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || |||||||| || | ||||||||| ||||||||| Sbjct 6586297 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 6586356 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| |||||||| ||| ||||| |||| || || Sbjct 6586357 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGAGGTGG 6586403 >seq2929 Length=111302122 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||||| ||||||||||| |||||||| ||||||||||| || |||| ||| Sbjct 96932266 GAACCGCTGCTGCGGGAGAACCCCCGGCGGTTCGTCATTTTCCCCATCCAGTACCATGAC 96932325 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 96932326 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 96932379 >seq1781 Length=149560735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 129690884 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTT 129690825 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| | Sbjct 129690824 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 129690765 Query 117162 ACGAGG 117167 | |||| Sbjct 129690764 ATGAGG 129690759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515068015366000