Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1781 104 2e-17 seq2059 84.2 2e-11 >seq1781 Length=149560735 Score = 104 bits (114), Expect = 2e-17 Identities = 112/148 (76%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || |||||||||||||||||||||||||| |||||||| ||||| | ||| || |||||| Sbjct 102234834 TAATCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTCCCCCTCTTCT 102234893 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || || || || ||||||| |||| || || ||||| ||||||||||| Sbjct 102234894 CTGGTGCAAAACCCCTGCTTATC----CAGGAACTCACGTGACCCATTGGCATCCCAAAT 102234949 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | |||||| ||| | ||||||||| Sbjct 102234950 CTTCACACCCTTTGCAGAGAGCTCTTTG 102234977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 129/180 (72%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||| ||||| ||||| | || | || |||||||| || ||||| |||||||| ||| Sbjct 102230712 GTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGCACTCCT 102230771 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | || || || || | |||| ||||| Sbjct 102230772 AGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGAACATAG 102230831 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296 ||||| | | |||| || || ||||| ||||| | || |||||||| ||| ||| Sbjct 102230832 AACTGGCAAAGAGCATGGCAAGGTGGCAAAGCCATCAGAGAAATATCTAAGA-ATTACAA 102230890 >seq2059 Length=10123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/149 (75%), Gaps = 10/149 (7%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATT-GGAATCCATAAACAGGTCCAAGGTCTCCTTCTTC 97460 || |||||||||||||||||||||| |||| |||||||| ||||| | ||| || ||||| Sbjct 8715 TAATCTGCTCCAAAATGCCTCCATTGGGAAACCATAAACTGGTCCCAAGTC-CCCTCTTC 8657 Query 97461 TCT-ATCACAGAAACCAAGCTTATCTAAATAGGACCT-AGAT--CCATTTGCATCCCAAA 97516 ||| || || || ||||||| |||| || | | ||||| |||||||||| Sbjct 8656 TCTGGGTGCAAAACCCCTGCTTATC----CAGGAACTCACGTGACCATTGGCATCCCAAA 8601 Query 97517 TGTGCACACCAGATGCTGCAAGCTCTTTG 97545 | | |||||| ||| | ||||||||| Sbjct 8600 TCTTCACACCCTTTGCAGAGAGCTCTTTG 8572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346684784555750