Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 104 2e-17
seq2059 84.2 2e-11
>seq1781
Length=149560735
Score = 104 bits (114), Expect = 2e-17
Identities = 112/148 (76%), Gaps = 8/148 (5%)
Strand=Plus/Plus
Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461
|| |||||||||||||||||||||||||| |||||||| ||||| | ||| || ||||||
Sbjct 102234834 TAATCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTCCCCCTCTTCT 102234893
Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517
|| || || || ||||||| |||| || || ||||| |||||||||||
Sbjct 102234894 CTGGTGCAAAACCCCTGCTTATC----CAGGAACTCACGTGACCCATTGGCATCCCAAAT 102234949
Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545
| |||||| ||| | |||||||||
Sbjct 102234950 CTTCACACCCTTTGCAGAGAGCTCTTTG 102234977
Score = 91.5 bits (100), Expect = 1e-13
Identities = 129/180 (72%), Gaps = 1/180 (1%)
Strand=Plus/Plus
Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176
||||| ||||| ||||| | || | || |||||||| || ||||| |||||||| |||
Sbjct 102230712 GTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGCACTCCT 102230771
Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236
||||||||||| | || || ||||| | || || || || | |||| |||||
Sbjct 102230772 AGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGAACATAG 102230831
Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296
||||| | | |||| || || ||||| ||||| | || |||||||| ||| |||
Sbjct 102230832 AACTGGCAAAGAGCATGGCAAGGTGGCAAAGCCATCAGAGAAATATCTAAGA-ATTACAA 102230890
>seq2059
Length=10123
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/149 (75%), Gaps = 10/149 (7%)
Strand=Plus/Minus
Query 97402 TATTCTGCTCCAAAATGCCTCCATT-GGAATCCATAAACAGGTCCAAGGTCTCCTTCTTC 97460
|| |||||||||||||||||||||| |||| |||||||| ||||| | ||| || |||||
Sbjct 8715 TAATCTGCTCCAAAATGCCTCCATTGGGAAACCATAAACTGGTCCCAAGTC-CCCTCTTC 8657
Query 97461 TCT-ATCACAGAAACCAAGCTTATCTAAATAGGACCT-AGAT--CCATTTGCATCCCAAA 97516
||| || || || ||||||| |||| || | | ||||| ||||||||||
Sbjct 8656 TCTGGGTGCAAAACCCCTGCTTATC----CAGGAACTCACGTGACCATTGGCATCCCAAA 8601
Query 97517 TGTGCACACCAGATGCTGCAAGCTCTTTG 97545
| | |||||| ||| | |||||||||
Sbjct 8600 TCTTCACACCCTTTGCAGAGAGCTCTTTG 8572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346684784555750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |