Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq2929 116 7e-21
>seq2929
Length=111302122
Score = 116 bits (128), Expect = 7e-21
Identities = 107/133 (80%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|| ||||||||||||||| | ||| | ||||| |||||||||||||||| ||||| ||
Sbjct 79576965 GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTTATTATGTACATGTATTACGGA 79577024
Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175
| || || ||||| ||| | |||||| |||||||| ||||||||||| || | |||||
Sbjct 79577025 TTAGCTGCCTGTGGCCCTAAAGTTCAG-AAGTATCTGTGGTGGAAACGATACTTGACTAT 79577083
Query 52176 AATGCAGTTGGTA 52188
| |||| |||||
Sbjct 79577084 ATTGCAACTGGTA 79577096
Score = 100 bits (110), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| ||||||||| | |||| || || || || |||| ||||| || ||||| || ||
Sbjct 79577795 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATCGATTGTCCTTT 79577854
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
|| |||||||| || ||| || ||| ||||| |||| | ||||| || |||||||
Sbjct 79577855 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 79577914
Query 52305 TAACTTCTATTTTAGAACATACAAG 52329
||||||||| | | | ||||| |||
Sbjct 79577915 TAACTTCTACTATCGGACATATAAG 79577939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 922925899439000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |