Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq5491 910 0.0 seq3710 89.7 6e-13 >seq5491 Length=24091566 Score = 910 bits (1008), Expect = 0.0 Identities = 763/953 (80%), Gaps = 102/953 (11%) Strand=Plus/Plus Query 1380 CAGGACATGTTTTAACGAGGTTCTGCGCTAAATCCAGGGCGGGAAAGCTCAGCCCGCATC 1439 |||| | |||||||||||| |||||||| || ||| || ||| ||||||||| |||| | Sbjct 20041883 CAGGCCGTGTTTTAACGAGCTTCTGCGCGAACTCCGGGCCGGTGAAGCTCAGCGCGCAGC 20041942 Query 1440 TCGCAGCCCCCGGATCCGATCCCGCAGACCCCGGCCCACAGGAAGGGGCGGGGCACGTGC 1499 |||||||||| | ||| || ||||| |||||||||||||||||||||| ||||| Sbjct 20041943 TCGCAGCCCC-GCATCGGACCCCGC-------GGCCCACAGGAAGGGGCGGGGCGCGTGC 20041994 Query 1500 ATGGGGCGTG----------------------------------------GCGGGAGATG 1519 || ||||| ||||||| || Sbjct 20041995 GGGGCGCGTGCGGGGGGCGTGGCCGGGCCCGGCCGGCAGCACGCGGTGCGGCGGGAGGTG 20042054 Query 1520 AATGACCGCGGAGTTCCAAACTCCCGC-ACCGGCCCCTCTCTGCTCGCTCTCCTCCCCGC 1578 ||||||||||||||||||||||||||| | || |||||||| || ||||||||||||||| Sbjct 20042055 AATGACCGCGGAGTTCCAAACTCCCGCCAGCGTCCCCTCTCCGCCCGCTCTCCTCCCCGC 20042114 Query 1579 CGCCAATAGCTACGCGGCAGCGTACAGCCCGGCCAATAGGCGCGCGGTGGGCGTAGGCGG 1638 ||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||| Sbjct 20042115 GGCCAATAGCGGGGCGGCAGCGTGCAGCCCGGCCAATGGGCGCCCGGTGGGCGTAGGCGG 20042174 Query 1639 AGGAAGCTACAAGAGCCCCACGCGGGGTTCCCCCGGCACACGTGGCGGGTGGAAGGCTCC 1698 |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 20042175 AGGAGGCTACAAGAGCCCCACGCGGGGTTCCCCCGGCACGCGTGGCGGGTGGAAGGCTCC 20042234 Query 1699 GCTGTGTCTAACCCTAATCGGAGGTATTGATGGTACTGTCGCCGCGCTCCCTCCGCCCGC 1758 |||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||||| Sbjct 20042235 GCTGTGCCTAACCCTAATCGGGGGAATTGATGGTGCTGTCGCCGCGCTCCCTCCGCCCGC 20042294 Query 1759 ----TGTTT-ACTCGCTGACTTTCAGCGGGCTAGGGGAGCCGCCCCAGGGGG-------- 1805 ||||| ||||||||||||||||||||| || ||||||||||| ||||| Sbjct 20042295 CCGCTGTTTTACTCGCTGACTTTCAGCGGGCGAGAGGAGCCGCCCCGGGGGGGAGGCGGG 20042354 Query 1806 CGCCNNNNNNNNNNNNNNNNNNNNCGGACGCGGG---------------AGAAAGGACCG 1850 || | ||| | ||| ||||||| ||| Sbjct 20042355 CGGCGGGAGGGGGCCGGGGCGCCGCGGCGGTGGGGGTCGGGGGGGGGAGAGAAAGGGCCG 20042414 Query 1851 AAAGGGGCTCCACGGCAAACaaaaaaaaaCGTCAGCGAGGGGTCCTCTCGCCCCCATCCG 1910 ||||||||||| |||| || ||||||||||||||||||||| |||||||| ||||| Sbjct 20042415 AAAGGGGCTCCGCGGCCAA-----AAAAACGTCAGCGAGGGGTCCGCTCGCCCCGATCCG 20042469 Query 1911 CCCTGGGGTCCTCGCCCGCA-GGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAG 1969 ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 20042470 CCCTGGGGTCCCCGCTCGCGTGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAG 20042529 Query 1970 AGTTCGCCTCTGTCAGCCTCGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgccccc 2029 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 20042530 AGTTCGCCTCTGTCAGCCTCGGCGGCGCGCGGGAGGTGCGGCGCGCGGCCCCGCGCCCCC 20042589 Query 2030 agcagagcaacacgggagcggcgcccccggggcaacccccgcgcccccctgcgccgtggg 2089 |||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 20042590 AGCAGAGCAA-ACGGGAGCGGCGCCCCCGGGGTAACCCCCGCGCTCCCCTGCGCCGTGGG 20042648 Query 2090 gcgcgcggacggcgtcgctcccacacgcgcggccccgcgcgcACGACCGTTGGAGC---- 2145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20042649 GCGCGCGGACGGCGTCGCTCCCACACGCGCGGCCCCGCGCGCACGACCGTTGGAGCCGTT 20042708 Query 2146 -----CGTTGAGCCGCGCGCGGGGCTCTGTGAGTAGACCGAACGGGCC-CCCCGCGGAGG 2199 ||||| |||||||||||||| | ||||| ||||| | ||||| |||||| |||| Sbjct 20042709 GGAGACGTTGGGCCGCGCGCGGGGCGCCGTGAGGAGACCCACGGGGCCGCCCCGCTGAGG 20042768 Query 2200 TGGG--------CGCTCGAGCCCGGTCCCTGCGCAGGTGGTGCCCGCTGGGCG 2244 |||| || ||| |||||||||| ||||||||| |||||||||||| Sbjct 20042769 TGGGCGGGCGGTCGGTCGGGCCCGGTCCCCGCGCAGGTGCAGCCCGCTGGGCG 20042821 Score = 910 bits (1008), Expect = 0.0 Identities = 764/953 (80%), Gaps = 102/953 (11%) Strand=Plus/Minus Query 139376 CGCCCAGCGGGCACCACCTGCGCAGGGACCGGGCTCGAGCG--------CCCACCTCCGC 139427 |||||||||||| ||||||||| |||||||||| ||| || |||||||| || Sbjct 20042821 CGCCCAGCGGGCTGCACCTGCGCGGGGACCGGGCCCGACCGACCGCCCGCCCACCTCAGC 20042762 Query 139428 GGGG-GGCCCGTTCGGTCTACTCACAGAGCCCCGCGCGCGGCTCAACG---------GCT 139477 |||| ||||| | ||||| ||||| | |||||||||||||| ||||| ||| Sbjct 20042761 GGGGCGGCCCCGTGGGTCTCCTCACGGCGCCCCGCGCGCGGCCCAACGTCTCCAACGGCT 20042702 Query 139478 CCAACGGTCGTgcgcgcggggccgcgcgtgtgggagcgacgccgtccgcgcgccccacgg 139537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20042701 CCAACGGTCGTGCGCGCGGGGCCGCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGG 20042642 Query 139538 cgcaggggggcgcgggggttgccccgggggcgccgctcccgtgttgctctgctgggggcg 139597 |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 20042641 CGCAGGGGAGCGCGGGGGTTACCCCGGGGGCGCCGCTCCCGT-TTGCTCTGCTGGGGGCG 20042583 Query 139598 cggggccgcgcgcCGCATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCG 139657 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 20042582 CGGGGCCGCGCGCCGCACCTCCCGCGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCG 20042523 Query 139658 GCGGCAATGGCGGGTGCCGGCCGACCGCGGCC-TGCGGGCGAGGACCCCAGGGCGGATGG 139716 |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| | Sbjct 20042522 GCGGCAATGGCGGGTGCCGGCCGACCGCGGCCACGCGAGCGGGGACCCCAGGGCGGATCG 20042463 Query 139717 GGGCGAGAGGACCCCTCGCTGACGtttttttttGTTTGCCGTGGAGCCCCTTTCGGTCCT 139776 ||||||| ||||||||||||||||||||| || |||| |||||||||||||| ||| Sbjct 20042462 GGGCGAGCGGACCCCTCGCTGACGTTTTT-----TTGGCCGCGGAGCCCCTTTCGGCCCT 20042408 Query 139777 TTCT------CCCGCGTC--------------CGCCC---CANNNNNNNNNNNNNNNNNN 139813 |||| ||| || | ||||| | Sbjct 20042407 TTCTCTCCCCCCCCCGACCCCCACCGCCGCGGCGCCCCGGCCCCCTCCCGCCGCCCGCCT 20042348 Query 139814 NNCCCCTGGGGCGGCTCCCCTAGCCCGCTGAAAGTCAGCGAGT-AAACA----GCGGGCG 139868 |||| ||||||||||| || ||||||||||||||||||||| ||||| ||||||| Sbjct 20042347 CCCCCCCGGGGCGGCTCCTCTCGCCCGCTGAAAGTCAGCGAGTAAAACAGCGGGCGGGCG 20042288 Query 139869 GAGGGAGCGCGGCGACAGTACCATCAATACCTCCGATTAGGGTTAGACACAGCGGAGCCT 139928 |||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||| Sbjct 20042287 GAGGGAGCGCGGCGACAGCACCATCAATTCCCCCGATTAGGGTTAGGCACAGCGGAGCCT 20042228 Query 139929 TCCACCCGCCACGTGTGCCGGGGGAACCCCGCGTGGGGCTCTTGTAGCTTCCTCCGCCTA 139988 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 20042227 TCCACCCGCCACGCGTGCCGGGGGAACCCCGCGTGGGGCTCTTGTAGCCTCCTCCGCCTA 20042168 Query 139989 CGCCCACCGCGCGCCTATTGGCCGGGCTGTACGCTGCCGCGTAGCTATTGGCGGCGGGGA 140048 ||||||||| ||||| ||||||||||||| |||||||||| ||||||||| ||||||| Sbjct 20042167 CGCCCACCGGGCGCCCATTGGCCGGGCTGCACGCTGCCGCCCCGCTATTGGCCGCGGGGA 20042108 Query 140049 GGAGAGCGAGCAGAGAGGGGCCGGT-GCGGGAGTTTGGAACTCCGCGGTCATTCATCTCC 140107 |||||||| || |||||||| || | ||||||||||||||||||||||||||||| |||| Sbjct 20042107 GGAGAGCGGGCGGAGAGGGGACGCTGGCGGGAGTTTGGAACTCCGCGGTCATTCACCTCC 20042048 Query 140108 CGC----------------------------------------CACGCCCCATGCACGTG 140127 ||| ||||| || ||||| | Sbjct 20042047 CGCCGCACCGCGTGCTGCCGGCCGGGCCCGGCCACGCCCCCCGCACGCGCCCCGCACGCG 20041988 Query 140128 CCCCGCCCCTTCCTGTGGGCCGGGGTCTGCGGGATCGGATCCGGGGGCTGCGAGATGCGG 140187 ||||||||||||||||||||| ||||| || ||| | ||||||||||| |||| Sbjct 20041987 CCCCGCCCCTTCCTGTGGGCC-------GCGGGGTCCGATGC-GGGGCTGCGAGCTGCGC 20041936 Query 140188 GCTGAGCTTTCCCGCCCTGGATTTAGCGCAGAACCTCGTTAAAACATGTCCTG 140240 ||||||||| ||| || ||| || |||||||| |||||||||||| | |||| Sbjct 20041935 GCTGAGCTTCACCGGCCCGGAGTTCGCGCAGAAGCTCGTTAAAACACGGCCTG 20041883 Score = 230 bits (254), Expect = 3e-55 Identities = 273/360 (76%), Gaps = 10/360 (3%) Strand=Plus/Plus Query 2350 GAGCCGTCCTCTGCCTCGGCACGCTCCGCAATA-AGCGTGGGCAAACGTGTGGGCCGTGC 2408 ||||||||||||||||| |||| | |||| | | |||| || | |||| |||||||| Sbjct 20043100 GAGCCGTCCTCTGCCTCAGCAC-CGCCGCCACACAGCGCGGCCCG-CGTGCCGGCCGTGC 20043157 Query 2409 AGGGCATGAGCGTGCACAAAGACGTGGCCCTGGGGCTTGGGCTGAGCGCAGTGCGATGCC 2468 ||| || ||||| ||||||| | | |||||||||| | |||||| | |||| |||||||| Sbjct 20043158 AGGACA-GAGCGCGCACAAA-AGGCGGCCCTGGGGAT-GGGCTGCGAGCAGCGCGATGCC 20043214 Query 2469 CCCGGGTCATCACCCGTCCCGCAGATCCCCGTGCACGGGGTCAGTGCCATCTTGTGGTCT 2528 ||| | | |||||| ||||| | ||||||||| | || | |||||||| ||| || Sbjct 20043215 TCCGTGCCGCCACCCGCCCCGCTGCGCCCCGTGCATGTGGCCGCTGCCATCTGCTGGGCT 20043274 Query 2529 CGGCTTTCTTTTTTCCCCCTTTTGCACGAAGAGTCAGTGAACTTGGGGTACTTAATCGTG 2588 ||||||||||| | |||| ||| |||||||| |||| |||||| ||||||||||| || Sbjct 20043275 CGGCTTTCTTTATACCCCGTTTCGCACGAAGGATCAGCGAACTT-GGGTACTTAATTATG 20043333 Query 2589 CTTTAATTGCGCGATGGAGAACCGTTGCTAGAATATGTGGGGATAGAGAAGTCCGATACC 2648 ||||||| |||||||| | | |||| ||| | |||| || | ||||||| | || Sbjct 20043334 TATTAATTGGGCGATGGAAACTCATTGCCGGAACACGTGGCAATGGCGAAGTCCAACACG 20043393 Query 2649 CTCAGAAATGTGCGAGTCCTGCGGGTAGAATCGGCGCAGCACTGAATAAACCCGCGGGGC 2708 | || |||||| | || || ||| || || | |||||||| |||||| | ||||| Sbjct 20043394 CGTGGAGATGTGCCGGGCCCGCCGGTGGAGTCCGAGCAGCACT---TAAACCGGTGGGGC 20043450 Score = 230 bits (254), Expect = 3e-55 Identities = 273/360 (76%), Gaps = 10/360 (3%) Strand=Plus/Minus Query 138912 GCCCCGCGGGTTTATTCAGTGCTGCGCCGATTCTACCCGCAGGACTCGCACATTTCTGAG 138971 ||||| | |||||| |||||||| | || || ||| || || | |||||| || | Sbjct 20043450 GCCCCACCGGTTTA---AGTGCTGCTCGGACTCCACCGGCGGGCCCGGCACATCTCCACG 20043394 Query 138972 GGTATCGGACTTCTCTATCCCCACATATTCTAGCAACGGTTCTCCATCGCGCAATTAAAG 139031 || | ||||||| | || |||| | ||| |||| | | |||||||| ||||||| Sbjct 20043393 CGTGTTGGACTTCGCCATTGCCACGTGTTCCGGCAATGAGTTTCCATCGCCCAATTAATA 20043334 Query 139032 CACGATTAAGTACCCCAAGTTCACTGACTCTTCGTGCAAAAGGGGGAAAAAAGAAAGCCG 139091 || ||||||||||| |||||| |||| |||||||| ||| |||| | ||||||||||| Sbjct 20043333 CATAATTAAGTACCC-AAGTTCGCTGATCCTTCGTGCGAAACGGGGTATAAAGAAAGCCG 20043275 Query 139092 AGACCACAAGATGGCACTGACCCCGTGCACGGGGATCTGCGGGACGGGTGATGACCCGGG 139151 || ||| |||||||| | || | ||||||||| | ||||| |||||| | | ||| Sbjct 20043274 AGCCCAGCAGATGGCAGCGGCCACATGCACGGGGCGCAGCGGGGCGGGTGGCGGCACGGA 20043215 Query 139152 GGCATCGCACTGCGCTCAGCCCAAGCCCCAGGGCCACGTCTTTGTGCACGCTCATGCCCT 139211 |||||||| |||| | |||||| | |||||||||| | | ||||||| ||||| || ||| Sbjct 20043214 GGCATCGCGCTGCTCGCAGCCC-ATCCCCAGGGCCGCCT-TTTGTGCGCGCTC-TGTCCT 20043158 Query 139212 GCACGGCCCACACGTTTGCCCACGCT-TATTGCGGAGCGTGCCGAGGCAGAGGACGGCTC 139270 |||||||| |||| | || |||| | | |||| | |||| ||||||||||||||||| Sbjct 20043157 GCACGGCCGGCACG-CGGGCCGCGCTGTGTGGCGGCG-GTGCTGAGGCAGAGGACGGCTC 20043100 >seq3710 Length=91282656 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 3175 ACTTACATAATTTCAGTCCTCCTGCAGTGTATACCCGGTGGTATCACGTCAACAGCGATA 3234 |||||||| || || |||||| |||||| |||||||| || |||||||||| || | | Sbjct 35246680 ACTTACATGATCTCTTTCCTCCGGCAGTGAATACCCGGCGGCATCACGTCAATGGCAAGA 35246739 Query 3235 ATAGGCCCCAAGCCAGTAGGCCGATTAGTGACTTTCACGCACTTGCACCTCTTG-TCGAC 3293 || |||||| || | | | ||| ||||| || ||||||||||||||| | | | Sbjct 35246740 ATGAGCCCCAGGCTGATGATCTGGGCAGTCACTTTGACACACTTGCACCTCTTGTTGGTC 35246799 Query 3294 AGCGAGACTCTCCAGTGA 3311 ||| || |||||||| || Sbjct 35246800 AGC-AGGCTCTCCAGCGA 35246816 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 138309 TCACTGGAGAGTCTCGCTGTCGA-CAAGAGGTGCAAGTGCGTGAAAGTCACTAATCGGCC 138367 || |||||||| || |||| | | ||||||||||||||| || ||||| ||| | | Sbjct 35246816 TCGCTGGAGAGCCT-GCTGACCAACAAGAGGTGCAAGTGTGTCAAAGTGACTGCCCAGAT 35246758 Query 138368 TACTGGCTTGGGGCCTATTATCGCTGTTGACGTGATACCACCGGGTATACACTGCAGGAG 138427 | || |||||| ||| | || |||||||||| || |||||||| |||||| |||| Sbjct 35246757 CATCAGCCTGGGGCTCATTCTTGCCATTGACGTGATGCCGCCGGGTATTCACTGCCGGAG 35246698 Query 138428 GACTGAAATTATGTAAGT 138445 || || || |||||||| Sbjct 35246697 GAAAGAGATCATGTAAGT 35246680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568901813874000