Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_002229.3
Length=177874
Score E
Sequences producing significant alignments: (Bits) Value
seq5491 910 0.0
seq3710 89.7 6e-13
>seq5491
Length=24091566
Score = 910 bits (1008), Expect = 0.0
Identities = 763/953 (80%), Gaps = 102/953 (11%)
Strand=Plus/Plus
Query 1380 CAGGACATGTTTTAACGAGGTTCTGCGCTAAATCCAGGGCGGGAAAGCTCAGCCCGCATC 1439
|||| | |||||||||||| |||||||| || ||| || ||| ||||||||| |||| |
Sbjct 20041883 CAGGCCGTGTTTTAACGAGCTTCTGCGCGAACTCCGGGCCGGTGAAGCTCAGCGCGCAGC 20041942
Query 1440 TCGCAGCCCCCGGATCCGATCCCGCAGACCCCGGCCCACAGGAAGGGGCGGGGCACGTGC 1499
|||||||||| | ||| || ||||| |||||||||||||||||||||| |||||
Sbjct 20041943 TCGCAGCCCC-GCATCGGACCCCGC-------GGCCCACAGGAAGGGGCGGGGCGCGTGC 20041994
Query 1500 ATGGGGCGTG----------------------------------------GCGGGAGATG 1519
|| ||||| ||||||| ||
Sbjct 20041995 GGGGCGCGTGCGGGGGGCGTGGCCGGGCCCGGCCGGCAGCACGCGGTGCGGCGGGAGGTG 20042054
Query 1520 AATGACCGCGGAGTTCCAAACTCCCGC-ACCGGCCCCTCTCTGCTCGCTCTCCTCCCCGC 1578
||||||||||||||||||||||||||| | || |||||||| || |||||||||||||||
Sbjct 20042055 AATGACCGCGGAGTTCCAAACTCCCGCCAGCGTCCCCTCTCCGCCCGCTCTCCTCCCCGC 20042114
Query 1579 CGCCAATAGCTACGCGGCAGCGTACAGCCCGGCCAATAGGCGCGCGGTGGGCGTAGGCGG 1638
||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||
Sbjct 20042115 GGCCAATAGCGGGGCGGCAGCGTGCAGCCCGGCCAATGGGCGCCCGGTGGGCGTAGGCGG 20042174
Query 1639 AGGAAGCTACAAGAGCCCCACGCGGGGTTCCCCCGGCACACGTGGCGGGTGGAAGGCTCC 1698
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 20042175 AGGAGGCTACAAGAGCCCCACGCGGGGTTCCCCCGGCACGCGTGGCGGGTGGAAGGCTCC 20042234
Query 1699 GCTGTGTCTAACCCTAATCGGAGGTATTGATGGTACTGTCGCCGCGCTCCCTCCGCCCGC 1758
|||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 20042235 GCTGTGCCTAACCCTAATCGGGGGAATTGATGGTGCTGTCGCCGCGCTCCCTCCGCCCGC 20042294
Query 1759 ----TGTTT-ACTCGCTGACTTTCAGCGGGCTAGGGGAGCCGCCCCAGGGGG-------- 1805
||||| ||||||||||||||||||||| || ||||||||||| |||||
Sbjct 20042295 CCGCTGTTTTACTCGCTGACTTTCAGCGGGCGAGAGGAGCCGCCCCGGGGGGGAGGCGGG 20042354
Query 1806 CGCCNNNNNNNNNNNNNNNNNNNNCGGACGCGGG---------------AGAAAGGACCG 1850
|| | ||| | ||| ||||||| |||
Sbjct 20042355 CGGCGGGAGGGGGCCGGGGCGCCGCGGCGGTGGGGGTCGGGGGGGGGAGAGAAAGGGCCG 20042414
Query 1851 AAAGGGGCTCCACGGCAAACaaaaaaaaaCGTCAGCGAGGGGTCCTCTCGCCCCCATCCG 1910
||||||||||| |||| || ||||||||||||||||||||| |||||||| |||||
Sbjct 20042415 AAAGGGGCTCCGCGGCCAA-----AAAAACGTCAGCGAGGGGTCCGCTCGCCCCGATCCG 20042469
Query 1911 CCCTGGGGTCCTCGCCCGCA-GGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAG 1969
||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 20042470 CCCTGGGGTCCCCGCTCGCGTGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAG 20042529
Query 1970 AGTTCGCCTCTGTCAGCCTCGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgccccc 2029
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 20042530 AGTTCGCCTCTGTCAGCCTCGGCGGCGCGCGGGAGGTGCGGCGCGCGGCCCCGCGCCCCC 20042589
Query 2030 agcagagcaacacgggagcggcgcccccggggcaacccccgcgcccccctgcgccgtggg 2089
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 20042590 AGCAGAGCAA-ACGGGAGCGGCGCCCCCGGGGTAACCCCCGCGCTCCCCTGCGCCGTGGG 20042648
Query 2090 gcgcgcggacggcgtcgctcccacacgcgcggccccgcgcgcACGACCGTTGGAGC---- 2145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20042649 GCGCGCGGACGGCGTCGCTCCCACACGCGCGGCCCCGCGCGCACGACCGTTGGAGCCGTT 20042708
Query 2146 -----CGTTGAGCCGCGCGCGGGGCTCTGTGAGTAGACCGAACGGGCC-CCCCGCGGAGG 2199
||||| |||||||||||||| | ||||| ||||| | ||||| |||||| ||||
Sbjct 20042709 GGAGACGTTGGGCCGCGCGCGGGGCGCCGTGAGGAGACCCACGGGGCCGCCCCGCTGAGG 20042768
Query 2200 TGGG--------CGCTCGAGCCCGGTCCCTGCGCAGGTGGTGCCCGCTGGGCG 2244
|||| || ||| |||||||||| ||||||||| ||||||||||||
Sbjct 20042769 TGGGCGGGCGGTCGGTCGGGCCCGGTCCCCGCGCAGGTGCAGCCCGCTGGGCG 20042821
Score = 910 bits (1008), Expect = 0.0
Identities = 764/953 (80%), Gaps = 102/953 (11%)
Strand=Plus/Minus
Query 139376 CGCCCAGCGGGCACCACCTGCGCAGGGACCGGGCTCGAGCG--------CCCACCTCCGC 139427
|||||||||||| ||||||||| |||||||||| ||| || |||||||| ||
Sbjct 20042821 CGCCCAGCGGGCTGCACCTGCGCGGGGACCGGGCCCGACCGACCGCCCGCCCACCTCAGC 20042762
Query 139428 GGGG-GGCCCGTTCGGTCTACTCACAGAGCCCCGCGCGCGGCTCAACG---------GCT 139477
|||| ||||| | ||||| ||||| | |||||||||||||| ||||| |||
Sbjct 20042761 GGGGCGGCCCCGTGGGTCTCCTCACGGCGCCCCGCGCGCGGCCCAACGTCTCCAACGGCT 20042702
Query 139478 CCAACGGTCGTgcgcgcggggccgcgcgtgtgggagcgacgccgtccgcgcgccccacgg 139537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20042701 CCAACGGTCGTGCGCGCGGGGCCGCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGG 20042642
Query 139538 cgcaggggggcgcgggggttgccccgggggcgccgctcccgtgttgctctgctgggggcg 139597
|||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 20042641 CGCAGGGGAGCGCGGGGGTTACCCCGGGGGCGCCGCTCCCGT-TTGCTCTGCTGGGGGCG 20042583
Query 139598 cggggccgcgcgcCGCATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCG 139657
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 20042582 CGGGGCCGCGCGCCGCACCTCCCGCGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCG 20042523
Query 139658 GCGGCAATGGCGGGTGCCGGCCGACCGCGGCC-TGCGGGCGAGGACCCCAGGGCGGATGG 139716
|||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
Sbjct 20042522 GCGGCAATGGCGGGTGCCGGCCGACCGCGGCCACGCGAGCGGGGACCCCAGGGCGGATCG 20042463
Query 139717 GGGCGAGAGGACCCCTCGCTGACGtttttttttGTTTGCCGTGGAGCCCCTTTCGGTCCT 139776
||||||| ||||||||||||||||||||| || |||| |||||||||||||| |||
Sbjct 20042462 GGGCGAGCGGACCCCTCGCTGACGTTTTT-----TTGGCCGCGGAGCCCCTTTCGGCCCT 20042408
Query 139777 TTCT------CCCGCGTC--------------CGCCC---CANNNNNNNNNNNNNNNNNN 139813
|||| ||| || | ||||| |
Sbjct 20042407 TTCTCTCCCCCCCCCGACCCCCACCGCCGCGGCGCCCCGGCCCCCTCCCGCCGCCCGCCT 20042348
Query 139814 NNCCCCTGGGGCGGCTCCCCTAGCCCGCTGAAAGTCAGCGAGT-AAACA----GCGGGCG 139868
|||| ||||||||||| || ||||||||||||||||||||| ||||| |||||||
Sbjct 20042347 CCCCCCCGGGGCGGCTCCTCTCGCCCGCTGAAAGTCAGCGAGTAAAACAGCGGGCGGGCG 20042288
Query 139869 GAGGGAGCGCGGCGACAGTACCATCAATACCTCCGATTAGGGTTAGACACAGCGGAGCCT 139928
|||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||
Sbjct 20042287 GAGGGAGCGCGGCGACAGCACCATCAATTCCCCCGATTAGGGTTAGGCACAGCGGAGCCT 20042228
Query 139929 TCCACCCGCCACGTGTGCCGGGGGAACCCCGCGTGGGGCTCTTGTAGCTTCCTCCGCCTA 139988
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 20042227 TCCACCCGCCACGCGTGCCGGGGGAACCCCGCGTGGGGCTCTTGTAGCCTCCTCCGCCTA 20042168
Query 139989 CGCCCACCGCGCGCCTATTGGCCGGGCTGTACGCTGCCGCGTAGCTATTGGCGGCGGGGA 140048
||||||||| ||||| ||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 20042167 CGCCCACCGGGCGCCCATTGGCCGGGCTGCACGCTGCCGCCCCGCTATTGGCCGCGGGGA 20042108
Query 140049 GGAGAGCGAGCAGAGAGGGGCCGGT-GCGGGAGTTTGGAACTCCGCGGTCATTCATCTCC 140107
|||||||| || |||||||| || | ||||||||||||||||||||||||||||| ||||
Sbjct 20042107 GGAGAGCGGGCGGAGAGGGGACGCTGGCGGGAGTTTGGAACTCCGCGGTCATTCACCTCC 20042048
Query 140108 CGC----------------------------------------CACGCCCCATGCACGTG 140127
||| ||||| || ||||| |
Sbjct 20042047 CGCCGCACCGCGTGCTGCCGGCCGGGCCCGGCCACGCCCCCCGCACGCGCCCCGCACGCG 20041988
Query 140128 CCCCGCCCCTTCCTGTGGGCCGGGGTCTGCGGGATCGGATCCGGGGGCTGCGAGATGCGG 140187
||||||||||||||||||||| ||||| || ||| | ||||||||||| ||||
Sbjct 20041987 CCCCGCCCCTTCCTGTGGGCC-------GCGGGGTCCGATGC-GGGGCTGCGAGCTGCGC 20041936
Query 140188 GCTGAGCTTTCCCGCCCTGGATTTAGCGCAGAACCTCGTTAAAACATGTCCTG 140240
||||||||| ||| || ||| || |||||||| |||||||||||| | ||||
Sbjct 20041935 GCTGAGCTTCACCGGCCCGGAGTTCGCGCAGAAGCTCGTTAAAACACGGCCTG 20041883
Score = 230 bits (254), Expect = 3e-55
Identities = 273/360 (76%), Gaps = 10/360 (3%)
Strand=Plus/Plus
Query 2350 GAGCCGTCCTCTGCCTCGGCACGCTCCGCAATA-AGCGTGGGCAAACGTGTGGGCCGTGC 2408
||||||||||||||||| |||| | |||| | | |||| || | |||| ||||||||
Sbjct 20043100 GAGCCGTCCTCTGCCTCAGCAC-CGCCGCCACACAGCGCGGCCCG-CGTGCCGGCCGTGC 20043157
Query 2409 AGGGCATGAGCGTGCACAAAGACGTGGCCCTGGGGCTTGGGCTGAGCGCAGTGCGATGCC 2468
||| || ||||| ||||||| | | |||||||||| | |||||| | |||| ||||||||
Sbjct 20043158 AGGACA-GAGCGCGCACAAA-AGGCGGCCCTGGGGAT-GGGCTGCGAGCAGCGCGATGCC 20043214
Query 2469 CCCGGGTCATCACCCGTCCCGCAGATCCCCGTGCACGGGGTCAGTGCCATCTTGTGGTCT 2528
||| | | |||||| ||||| | ||||||||| | || | |||||||| ||| ||
Sbjct 20043215 TCCGTGCCGCCACCCGCCCCGCTGCGCCCCGTGCATGTGGCCGCTGCCATCTGCTGGGCT 20043274
Query 2529 CGGCTTTCTTTTTTCCCCCTTTTGCACGAAGAGTCAGTGAACTTGGGGTACTTAATCGTG 2588
||||||||||| | |||| ||| |||||||| |||| |||||| ||||||||||| ||
Sbjct 20043275 CGGCTTTCTTTATACCCCGTTTCGCACGAAGGATCAGCGAACTT-GGGTACTTAATTATG 20043333
Query 2589 CTTTAATTGCGCGATGGAGAACCGTTGCTAGAATATGTGGGGATAGAGAAGTCCGATACC 2648
||||||| |||||||| | | |||| ||| | |||| || | ||||||| | ||
Sbjct 20043334 TATTAATTGGGCGATGGAAACTCATTGCCGGAACACGTGGCAATGGCGAAGTCCAACACG 20043393
Query 2649 CTCAGAAATGTGCGAGTCCTGCGGGTAGAATCGGCGCAGCACTGAATAAACCCGCGGGGC 2708
| || |||||| | || || ||| || || | |||||||| |||||| | |||||
Sbjct 20043394 CGTGGAGATGTGCCGGGCCCGCCGGTGGAGTCCGAGCAGCACT---TAAACCGGTGGGGC 20043450
Score = 230 bits (254), Expect = 3e-55
Identities = 273/360 (76%), Gaps = 10/360 (3%)
Strand=Plus/Minus
Query 138912 GCCCCGCGGGTTTATTCAGTGCTGCGCCGATTCTACCCGCAGGACTCGCACATTTCTGAG 138971
||||| | |||||| |||||||| | || || ||| || || | |||||| || |
Sbjct 20043450 GCCCCACCGGTTTA---AGTGCTGCTCGGACTCCACCGGCGGGCCCGGCACATCTCCACG 20043394
Query 138972 GGTATCGGACTTCTCTATCCCCACATATTCTAGCAACGGTTCTCCATCGCGCAATTAAAG 139031
|| | ||||||| | || |||| | ||| |||| | | |||||||| |||||||
Sbjct 20043393 CGTGTTGGACTTCGCCATTGCCACGTGTTCCGGCAATGAGTTTCCATCGCCCAATTAATA 20043334
Query 139032 CACGATTAAGTACCCCAAGTTCACTGACTCTTCGTGCAAAAGGGGGAAAAAAGAAAGCCG 139091
|| ||||||||||| |||||| |||| |||||||| ||| |||| | |||||||||||
Sbjct 20043333 CATAATTAAGTACCC-AAGTTCGCTGATCCTTCGTGCGAAACGGGGTATAAAGAAAGCCG 20043275
Query 139092 AGACCACAAGATGGCACTGACCCCGTGCACGGGGATCTGCGGGACGGGTGATGACCCGGG 139151
|| ||| |||||||| | || | ||||||||| | ||||| |||||| | | |||
Sbjct 20043274 AGCCCAGCAGATGGCAGCGGCCACATGCACGGGGCGCAGCGGGGCGGGTGGCGGCACGGA 20043215
Query 139152 GGCATCGCACTGCGCTCAGCCCAAGCCCCAGGGCCACGTCTTTGTGCACGCTCATGCCCT 139211
|||||||| |||| | |||||| | |||||||||| | | ||||||| ||||| || |||
Sbjct 20043214 GGCATCGCGCTGCTCGCAGCCC-ATCCCCAGGGCCGCCT-TTTGTGCGCGCTC-TGTCCT 20043158
Query 139212 GCACGGCCCACACGTTTGCCCACGCT-TATTGCGGAGCGTGCCGAGGCAGAGGACGGCTC 139270
|||||||| |||| | || |||| | | |||| | |||| |||||||||||||||||
Sbjct 20043157 GCACGGCCGGCACG-CGGGCCGCGCTGTGTGGCGGCG-GTGCTGAGGCAGAGGACGGCTC 20043100
>seq3710
Length=91282656
Score = 89.7 bits (98), Expect = 6e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 3175 ACTTACATAATTTCAGTCCTCCTGCAGTGTATACCCGGTGGTATCACGTCAACAGCGATA 3234
|||||||| || || |||||| |||||| |||||||| || |||||||||| || | |
Sbjct 35246680 ACTTACATGATCTCTTTCCTCCGGCAGTGAATACCCGGCGGCATCACGTCAATGGCAAGA 35246739
Query 3235 ATAGGCCCCAAGCCAGTAGGCCGATTAGTGACTTTCACGCACTTGCACCTCTTG-TCGAC 3293
|| |||||| || | | | ||| ||||| || ||||||||||||||| | | |
Sbjct 35246740 ATGAGCCCCAGGCTGATGATCTGGGCAGTCACTTTGACACACTTGCACCTCTTGTTGGTC 35246799
Query 3294 AGCGAGACTCTCCAGTGA 3311
||| || |||||||| ||
Sbjct 35246800 AGC-AGGCTCTCCAGCGA 35246816
Score = 89.7 bits (98), Expect = 6e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 138309 TCACTGGAGAGTCTCGCTGTCGA-CAAGAGGTGCAAGTGCGTGAAAGTCACTAATCGGCC 138367
|| |||||||| || |||| | | ||||||||||||||| || ||||| ||| | |
Sbjct 35246816 TCGCTGGAGAGCCT-GCTGACCAACAAGAGGTGCAAGTGTGTCAAAGTGACTGCCCAGAT 35246758
Query 138368 TACTGGCTTGGGGCCTATTATCGCTGTTGACGTGATACCACCGGGTATACACTGCAGGAG 138427
| || |||||| ||| | || |||||||||| || |||||||| |||||| ||||
Sbjct 35246757 CATCAGCCTGGGGCTCATTCTTGCCATTGACGTGATGCCGCCGGGTATTCACTGCCGGAG 35246698
Query 138428 GACTGAAATTATGTAAGT 138445
|| || || ||||||||
Sbjct 35246697 GAAAGAGATCATGTAAGT 35246680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568901813874000
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