Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq5650 298 6e-76 >seq5650 Length=20435342 Score = 298 bits (330), Expect = 6e-76 Identities = 310/411 (75%), Gaps = 0/411 (0%) Strand=Plus/Minus Query 125103 GCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCAGGTACGCGGC 125162 ||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||| Sbjct 8889531 GCTCACCCATCCGCCGTGCTCCTCCAGCCACTCGCCCTGCTCCTCGGCCAGGTACGCGGC 8889472 Query 125163 CAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACAGCGCCGTTGC 125222 |||||| ||||||| |||||| ||||||||||| |||||| | ||| |||||||| || Sbjct 8889471 CAGCGCGGCGGCCAGGCGGCTCGGCCCTTCCTCGCAGCCGCTCTCGGCCAGCGCCGCCGC 8889412 Query 125223 CAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAGCCGCTTCCGGA 125282 ||||| |||| || || | | |||||| || |||||||||| ||||| | ||| Sbjct 8889411 CAGCGTGCCGGTGAACACCACGAGCGCCAGCAGCCGGCCCCAGTTGAGGCCGCCTTCGGC 8889352 Query 125283 GTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTGCCGCCGCTCGC 125342 | || | | | |||| | ||||| || | ||| || ||| || | | ||| Sbjct 8889351 CTCCAGCTGCGCCGCCACCTTCCGCAGCAGCGCCGCCGCCTCCCGCGGCTCGGCCCGCGC 8889292 Query 125343 TAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGGCCGCCGCTCG 125402 | ||||||||||||||| |||||||||| |||||| |||||||||||||||||||| || Sbjct 8889291 CAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCTCGGCGCTCCAGCTCGGCCGCCGCCCG 8889232 Query 125403 CCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAGCAGTGCTGGAA 125462 ||| || | || || ||| || | | |||| || ||||||||| Sbjct 8889231 CCGCAGCTCGGCCGCCGTGGCGCTGGGAGGCAGCGCGGCGCCGCCGGCGCGGTGCTGGAA 8889172 Query 125463 GTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGGC 125513 ||| ||||||||||||| |||||| || |||||||| ||| | | |||||| Sbjct 8889171 GTAGTCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGAGAGCCCGGCATGGC 8889121 Score = 293 bits (324), Expect = 2e-74 Identities = 309/411 (75%), Gaps = 0/411 (0%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| ||||||||||||| |||||||||||| Sbjct 8889121 GCCATGCCGGGCTCTCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGACTACTTCCAGCAC 8889180 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || |||| | | || ||| || || | |||||||| ||||||||||| || Sbjct 8889181 CGCGCCGGCGGCGCCGCGCTGCCTCCCAGCGCCACGGCGGCCGAGCTGCGGCGGGCGGCG 8889240 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 ||||| |||||| |||||||||| ||||||||||||||| | ||| | | | Sbjct 8889241 GCCGAGCTGGAGCGCCGAGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 8889300 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| | || ||||| | |||| | | | || | ||| | || Sbjct 8889301 GAGCCGCGGGAGGCGGCGGCGCTGCTGCGGAAGGTGGCGGCGCAGCTGGAGGCCGAAGGC 8889360 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || |||||| | | || || |||| ||||||| ||||| Sbjct 8889361 GGCCTCAACTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCACCGGCACGCTGGCGGCGGCG 8889420 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| | |||||| ||||||||||| |||||| ||||||| ||||||||||||||| Sbjct 8889421 CTGGCCGAGAGCGGCTGCGAGGAAGGGCCGAGCCGCCTGGCCGCCGCGCTGGCCGCGTAC 8889480 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGC 157493 |||||||| ||||||||||||||| || |||||||||||||||||| ||| Sbjct 8889481 CTGGCCGAGGAGCAGGGCGAGTGGCTGGAGGAGCACGGCGGATGGGTGAGC 8889531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509034586320000