Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_002641.1
Length=159160
Score E
Sequences producing significant alignments: (Bits) Value
seq5650 298 6e-76
>seq5650
Length=20435342
Score = 298 bits (330), Expect = 6e-76
Identities = 310/411 (75%), Gaps = 0/411 (0%)
Strand=Plus/Minus
Query 125103 GCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCAGGTACGCGGC 125162
||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 8889531 GCTCACCCATCCGCCGTGCTCCTCCAGCCACTCGCCCTGCTCCTCGGCCAGGTACGCGGC 8889472
Query 125163 CAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACAGCGCCGTTGC 125222
|||||| ||||||| |||||| ||||||||||| |||||| | ||| |||||||| ||
Sbjct 8889471 CAGCGCGGCGGCCAGGCGGCTCGGCCCTTCCTCGCAGCCGCTCTCGGCCAGCGCCGCCGC 8889412
Query 125223 CAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAGCCGCTTCCGGA 125282
||||| |||| || || | | |||||| || |||||||||| ||||| | |||
Sbjct 8889411 CAGCGTGCCGGTGAACACCACGAGCGCCAGCAGCCGGCCCCAGTTGAGGCCGCCTTCGGC 8889352
Query 125283 GTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTGCCGCCGCTCGC 125342
| || | | | |||| | ||||| || | ||| || ||| || | | |||
Sbjct 8889351 CTCCAGCTGCGCCGCCACCTTCCGCAGCAGCGCCGCCGCCTCCCGCGGCTCGGCCCGCGC 8889292
Query 125343 TAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGGCCGCCGCTCG 125402
| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||
Sbjct 8889291 CAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCTCGGCGCTCCAGCTCGGCCGCCGCCCG 8889232
Query 125403 CCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAGCAGTGCTGGAA 125462
||| || | || || ||| || | | |||| || |||||||||
Sbjct 8889231 CCGCAGCTCGGCCGCCGTGGCGCTGGGAGGCAGCGCGGCGCCGCCGGCGCGGTGCTGGAA 8889172
Query 125463 GTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGGC 125513
||| ||||||||||||| |||||| || |||||||| ||| | | ||||||
Sbjct 8889171 GTAGTCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGAGAGCCCGGCATGGC 8889121
Score = 293 bits (324), Expect = 2e-74
Identities = 309/411 (75%), Gaps = 0/411 (0%)
Strand=Plus/Plus
Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142
|||||| | | ||| |||||||| || |||||| ||||||||||||| ||||||||||||
Sbjct 8889121 GCCATGCCGGGCTCTCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGACTACTTCCAGCAC 8889180
Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202
|| |||| | | || ||| || || | |||||||| ||||||||||| ||
Sbjct 8889181 CGCGCCGGCGGCGCCGCGCTGCCTCCCAGCGCCACGGCGGCCGAGCTGCGGCGGGCGGCG 8889240
Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262
||||| |||||| |||||||||| ||||||||||||||| | ||| | | |
Sbjct 8889241 GCCGAGCTGGAGCGCCGAGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 8889300
Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322
| ||| || ||| | || ||||| | |||| | | | || | ||| | ||
Sbjct 8889301 GAGCCGCGGGAGGCGGCGGCGCTGCTGCGGAAGGTGGCGGCGCAGCTGGAGGCCGAAGGC 8889360
Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382
||| |||||||||| || |||||| | | || || |||| ||||||| |||||
Sbjct 8889361 GGCCTCAACTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCACCGGCACGCTGGCGGCGGCG 8889420
Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442
||| ||| | |||||| ||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 8889421 CTGGCCGAGAGCGGCTGCGAGGAAGGGCCGAGCCGCCTGGCCGCCGCGCTGGCCGCGTAC 8889480
Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGC 157493
|||||||| ||||||||||||||| || |||||||||||||||||| |||
Sbjct 8889481 CTGGCCGAGGAGCAGGGCGAGTGGCTGGAGGAGCACGGCGGATGGGTGAGC 8889531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 509034586320000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |