Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 109 5e-19
seq2929 89.7 5e-13
>seq1781
Length=149560735
Score = 109 bits (120), Expect = 5e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304
|||||| || | | || || || || || | || || || || || | || ||||| |
Sbjct 129690747 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 129690806
Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364
| || | || || | |||||||||||| ||||||||||| |||||||| || |||||||
Sbjct 129690807 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 129690866
Query 16365 CTGCGGCAAATGCAACCAATCGCTCACC 16392
|||| ||||| ||||||| || ||||||
Sbjct 129690867 CTGCAGCAAAGGCAACCACTCTCTCACC 129690894
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947
||||||| ||| |||| || ||||| || || | | || |||||| | | ||
Sbjct 129686598 AAAAATCTGCATCCAGAGTGAAAACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 129686657
Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007
|||| || ||| | ||| ||||||||||||||||||||||| | |||||||| ||||
Sbjct 129686658 GATACTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 129686717
Query 16008 TAAAATCAAAAGGATTTT 16025
| ||||||||||||||||
Sbjct 129686718 TGAAATCAAAAGGATTTT 129686735
>seq2929
Length=111302122
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | ||| || ||||| || || || ||||||| |||| ||| ||
Sbjct 96934802 TCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 96934743
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||||||
Sbjct 96934742 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 96934683
Query 16379 AC 16380
||
Sbjct 96934682 AC 96934681
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985
|||||||| ||| ||| | |||||||||| |||| || ||||||||||| || ||
Sbjct 96936071 TTTGACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTG 96936012
Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023
||||| | || || || ||||| ||||||||||||||
Sbjct 96936011 CCTTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96935974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462376281635000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |