Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq5650 349 2e-91
seq7516 102 6e-17
>seq5650
Length=20435342
Score = 349 bits (386), Expect = 2e-91
Identities = 732/1081 (68%), Gaps = 14/1081 (1%)
Strand=Plus/Minus
Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603
|| |||||| || | || ||| | ||||| || ||||||||| |||||||| |||
Sbjct 5343516 CGCGGGGACGAGAAGGCGGTGCGGGACGCCCTGCTGAGCAACCTGGAGGTGAAGAACAAG 5343457
Query 107604 CGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAG 107663
|| ||| || || | | ||||| ||||| || | ||||| | ||||||||
Sbjct 5343456 AGGGAGCCCCTGACCCCCGAGGAGTACCTGAACATGACGAAGGACTGCGGCAGCTTCAAG 5343397
Query 107664 GCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCC 107723
| || | ||| | ||||| ||||| | || ||| ||||||||||| |||
Sbjct 5343396 GAGAGCCGGCGCTACATCGACTTCCCGCTGAGCGAGGAGGAGGCCGACTTCCCCATCGCC 5343337
Query 107724 TACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTAT 107783
||||| ||||| |||| | ||||| || | || || ||||| ||||| || | ||
Sbjct 5343336 TACTCCATGGTCATCCACCACAAGATCGAGATGTTCGAGCGGCTCCTGCGCTCCCTCTAC 5343277
Query 107784 GCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAG 107843
||||| |||||| | ||||| || |||||||| ||| |||| | | ||| | ||
Sbjct 5343276 GCCCCGCAGAACGTCTACTGCGTGCACGTGGACAGCAAGGCCCCCGCCGCCTTCCAGCAG 5343217
Query 107844 GCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCG 107903
|| || |||||| ||||||||||||| |||||| ||||||| |||
Sbjct 5343216 GCCGTGCGGGCCATCGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGTCTGGAGAGC 5343157
Query 107904 GTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTC 107963
||||| || |||||||||||| | |||| || ||||| ||||| ||| | ||| ||||
Sbjct 5343156 GTGGTGTACGCCTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTG 5343097
Query 107964 CAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAG 108023
| |||| | ||||| ||| ||| | || || || ||||| || ||||||||||| |||
Sbjct 5343096 CGGAGCCCCGTGCCCTGGCGCTACGTCCTCAACACCTGCGGCACCGACTTCCCCATCAAG 5343037
Query 108024 ACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCT 108083
||||| || |||| ||||| || || | || || |||| ||||||| ||||||||
Sbjct 5343036 ACCAACGCGGAGACGGTCCGCGCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGAGTCG 5342977
Query 108084 GAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTG--ACAGACA 108141
||| || | | | ||| | | |||||||| |||||| | | ||| |||
Sbjct 5342976 GAGAAGCCGACGGCCTACAAGCAGGAGCGCTGGAAGTACCGCCACCAAGTGGAGCAG-TT 5342918
Query 108142 CACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAG 108201
|| || || || || | |||| || || || | ||||||||||| |
Sbjct 5342917 CATCGT-CCGCACGGCCACGGAGAAGCCGCCGCCGCCGCTCCGCTCGCCCATGTTCACGG 5342859
Query 108202 GGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAAT 108261
| | ||||| | | || | || ||||| || | || || | || |||| |
Sbjct 5342858 GCAGCGCCTACATCGCGGTGACGCGGGCCTTCGTGCGGCACGTGCTGGAGGACCCCGAGG 5342799
Query 108262 CCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCA 108321
| || | | || |||| ||| |||||||| ||||||||||| ||| | |||||||
Sbjct 5342798 CGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGGGCCA 5342739
Query 108322 CCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCT 108381
| || | || || || | |||| ||| | || || | || ||||| || || |
Sbjct 5342738 CGCTGAACCGCGCGCCCGGTGTGCCCGGCGCCGTGCCCCACAACGACAAGTTCCAGATGT 5342679
Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441
| ||||||| || | || | || |||||||||||||||| || || || |||
Sbjct 5342678 CCGACATGAACGCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGGGACACGAGCC 5342619
Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTG---GAATCCATCGGAGGGCCATCTGCATTTACG 108498
|| ||||| || | |||||| | | | |||| || || | ||||||| ||||
Sbjct 5342618 GCGGAGCGCCCTACCCGCCCTGCACCGGCCGCTTCCAGCGCAG---CGTCTGCATCTACG 5342562
Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC- 108557
||||||||||| || |||||| || | | | || ||||||||||| |||||||| |||
Sbjct 5342561 GGGCCGGGGACGTGGCCTGGATGCTGCGGCAACACCACCTCTTGGCCAACAAGTTCGACT 5342502
Query 108558 CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAG-TACCTACGTCATAAGGCCAT 108616
|||| || || ||| || | | ||||| | | |||| |||| || | ||||||| |
Sbjct 5342501 CCGA-AGTAGACGATGCCGCCATCCAGTGTCTCG-AGAGCCACCTGCGCCGTAAGGCCCT 5342444
Query 108617 C 108617
|
Sbjct 5342443 C 5342443
>seq7516
Length=82310166
Score = 102 bits (112), Expect = 6e-17
Identities = 197/287 (69%), Gaps = 8/287 (3%)
Strand=Plus/Plus
Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333
|||| |||| |||||||| || ||||| || || |||| ||||| || ||||| |
Sbjct 37363355 TTGAGTGGGCAAAAGACACTTACAGCCCTGATGAGTACCTATGGGCAACAATTCAGAGAA 37363414
Query 108334 -CTCCGTGGATGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389
| ||| | | || || ||||| || || || |||||| | | || || |||
Sbjct 37363415 TCCCCGATG-TCCCAGGTGCTGTTTCTTCTAGTGAC---AAGTATGATGTTTCTGATATG 37363470
Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449
| ||| | |||||| | ||||||||||||||| ||| ||||| || | || |||
Sbjct 37363471 AATGCGCTGGCCAGGTTTGTCAAGTGGCAGTACTTCGAAGGAGACGTGTCTAAAGGTGCG 37363530
Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509
|| || |||| ||| |||||| ||| | | |||| | | ||||| || ||
Sbjct 37363531 CCCTACCCACCATGCAGTGGAATTCATGTTCGCTCTGTCTGTGTGTTCGGGGTAGGAGAT 37363590
Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556
||| ||||||| || | ||||| ||| |||| || || ||||||||
Sbjct 37363591 CTGAACTGGATGCTGCGAAACCACCACTTCTTTGCTAATAAGTTTGA 37363637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348169159752150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |