Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq5650 349 2e-91 seq7516 102 6e-17 >seq5650 Length=20435342 Score = 349 bits (386), Expect = 2e-91 Identities = 732/1081 (68%), Gaps = 14/1081 (1%) Strand=Plus/Minus Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603 || |||||| || | || ||| | ||||| || ||||||||| |||||||| ||| Sbjct 5343516 CGCGGGGACGAGAAGGCGGTGCGGGACGCCCTGCTGAGCAACCTGGAGGTGAAGAACAAG 5343457 Query 107604 CGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAG 107663 || ||| || || | | ||||| ||||| || | ||||| | |||||||| Sbjct 5343456 AGGGAGCCCCTGACCCCCGAGGAGTACCTGAACATGACGAAGGACTGCGGCAGCTTCAAG 5343397 Query 107664 GCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCC 107723 | || | ||| | ||||| ||||| | || ||| ||||||||||| ||| Sbjct 5343396 GAGAGCCGGCGCTACATCGACTTCCCGCTGAGCGAGGAGGAGGCCGACTTCCCCATCGCC 5343337 Query 107724 TACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTAT 107783 ||||| ||||| |||| | ||||| || | || || ||||| ||||| || | || Sbjct 5343336 TACTCCATGGTCATCCACCACAAGATCGAGATGTTCGAGCGGCTCCTGCGCTCCCTCTAC 5343277 Query 107784 GCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAG 107843 ||||| |||||| | ||||| || |||||||| ||| |||| | | ||| | || Sbjct 5343276 GCCCCGCAGAACGTCTACTGCGTGCACGTGGACAGCAAGGCCCCCGCCGCCTTCCAGCAG 5343217 Query 107844 GCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCG 107903 || || |||||| ||||||||||||| |||||| ||||||| ||| Sbjct 5343216 GCCGTGCGGGCCATCGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGTCTGGAGAGC 5343157 Query 107904 GTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTC 107963 ||||| || |||||||||||| | |||| || ||||| ||||| ||| | ||| |||| Sbjct 5343156 GTGGTGTACGCCTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTG 5343097 Query 107964 CAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAG 108023 | |||| | ||||| ||| ||| | || || || ||||| || ||||||||||| ||| Sbjct 5343096 CGGAGCCCCGTGCCCTGGCGCTACGTCCTCAACACCTGCGGCACCGACTTCCCCATCAAG 5343037 Query 108024 ACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCT 108083 ||||| || |||| ||||| || || | || || |||| ||||||| |||||||| Sbjct 5343036 ACCAACGCGGAGACGGTCCGCGCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGAGTCG 5342977 Query 108084 GAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTG--ACAGACA 108141 ||| || | | | ||| | | |||||||| |||||| | | ||| ||| Sbjct 5342976 GAGAAGCCGACGGCCTACAAGCAGGAGCGCTGGAAGTACCGCCACCAAGTGGAGCAG-TT 5342918 Query 108142 CACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAG 108201 || || || || || | |||| || || || | ||||||||||| | Sbjct 5342917 CATCGT-CCGCACGGCCACGGAGAAGCCGCCGCCGCCGCTCCGCTCGCCCATGTTCACGG 5342859 Query 108202 GGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAAT 108261 | | ||||| | | || | || ||||| || | || || | || |||| | Sbjct 5342858 GCAGCGCCTACATCGCGGTGACGCGGGCCTTCGTGCGGCACGTGCTGGAGGACCCCGAGG 5342799 Query 108262 CCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCA 108321 | || | | || |||| ||| |||||||| ||||||||||| ||| | ||||||| Sbjct 5342798 CGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGGGCCA 5342739 Query 108322 CCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCT 108381 | || | || || || | |||| ||| | || || | || ||||| || || | Sbjct 5342738 CGCTGAACCGCGCGCCCGGTGTGCCCGGCGCCGTGCCCCACAACGACAAGTTCCAGATGT 5342679 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | ||||||| || | || | || |||||||||||||||| || || || ||| Sbjct 5342678 CCGACATGAACGCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGGGACACGAGCC 5342619 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTG---GAATCCATCGGAGGGCCATCTGCATTTACG 108498 || ||||| || | |||||| | | | |||| || || | ||||||| |||| Sbjct 5342618 GCGGAGCGCCCTACCCGCCCTGCACCGGCCGCTTCCAGCGCAG---CGTCTGCATCTACG 5342562 Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC- 108557 ||||||||||| || |||||| || | | | || ||||||||||| |||||||| ||| Sbjct 5342561 GGGCCGGGGACGTGGCCTGGATGCTGCGGCAACACCACCTCTTGGCCAACAAGTTCGACT 5342502 Query 108558 CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAG-TACCTACGTCATAAGGCCAT 108616 |||| || || ||| || | | ||||| | | |||| |||| || | ||||||| | Sbjct 5342501 CCGA-AGTAGACGATGCCGCCATCCAGTGTCTCG-AGAGCCACCTGCGCCGTAAGGCCCT 5342444 Query 108617 C 108617 | Sbjct 5342443 C 5342443 >seq7516 Length=82310166 Score = 102 bits (112), Expect = 6e-17 Identities = 197/287 (69%), Gaps = 8/287 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 37363355 TTGAGTGGGCAAAAGACACTTACAGCCCTGATGAGTACCTATGGGCAACAATTCAGAGAA 37363414 Query 108334 -CTCCGTGGATGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 | ||| | | || || ||||| || || || |||||| | | || || ||| Sbjct 37363415 TCCCCGATG-TCCCAGGTGCTGTTTCTTCTAGTGAC---AAGTATGATGTTTCTGATATG 37363470 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| ||| ||||| || | || ||| Sbjct 37363471 AATGCGCTGGCCAGGTTTGTCAAGTGGCAGTACTTCGAAGGAGACGTGTCTAAAGGTGCG 37363530 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| |||||| ||| | | |||| | | ||||| || || Sbjct 37363531 CCCTACCCACCATGCAGTGGAATTCATGTTCGCTCTGTCTGTGTGTTCGGGGTAGGAGAT 37363590 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||| ||||||| || | ||||| ||| |||| || || |||||||| Sbjct 37363591 CTGAACTGGATGCTGCGAAACCACCACTTCTTTGCTAATAAGTTTGA 37363637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348169159752150