Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6642 125 6e-24 seq6387 125 6e-24 >seq6642 Length=9979828 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||||||||| ||||||||||| ||| ||| |||| ||| Sbjct 6586157 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 6586098 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||||| ||| || |||||||| | || |||||||| Sbjct 6586097 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGG 6586038 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 6586037 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 6585978 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || ||||| |||||||||||||| |||||||| Sbjct 6585977 CCAGTCAGGGTCTTCACAAAGATCTGCATGTT 6585946 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| ||||| ||| ||||||||| ||||||||||| | Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || ||||||| ||| || || ||||| Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 6586284 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || ||| || || ||| || | | | | |||| | || ||| Sbjct 6586283 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACC 6586224 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 6586223 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 6586176 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||||||||| ||||||||||| ||| ||| |||| ||| Sbjct 6586841 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 6586782 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || || ||||| | || || |||||| Sbjct 6586781 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGG 6586722 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 6586721 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 6586662 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| |||||||| ||||| |||||| Sbjct 6586661 CCAGTCAGGGTCTTCACGAAGATCTGCATG 6586632 >seq6387 Length=12762846 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 4540620 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 4540561 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || |||||| ||||| || | |||||||||||| Sbjct 4540560 AGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4540501 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||||| ||| || |||||| Sbjct 4540500 ATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTG 4540441 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||||| ||||| Sbjct 4540440 CCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412 Score = 122 bits (134), Expect = 7e-23 Identities = 155/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| ||| ||| |||| |||| Sbjct 4540163 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCA 4540104 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || ||||| |||| || ||| || ||||| || | |||||||||||| | Sbjct 4540103 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGA 4540044 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | | || | |||||||||| ||| || ||||||| Sbjct 4540043 TCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTGC 4539984 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 | || || |||||||| ||||| ||||||||| Sbjct 4539983 CAGTGAGGGTCTTCACGAAGATCTGCATGTTG 4539952 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 4540392 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCC 4540333 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || ||||| || | |||||||||||| Sbjct 4540332 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4540273 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 4540272 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 4540213 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||||||||| |||||| Sbjct 4540212 CCTGTCAAGGTCTTCACAAAGATCTGCATG 4540183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394962168367975