Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq6642 125 6e-24
seq6387 125 6e-24
>seq6642
Length=9979828
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||| ||| ||||||||| ||||||||||| ||| ||| |||| |||
Sbjct 6586157 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 6586098
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || ||||||| ||| || |||||||| | || ||||||||
Sbjct 6586097 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGG 6586038
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||| | ||| || ||||||
Sbjct 6586037 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 6585978
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|| ||||| |||||||||||||| ||||||||
Sbjct 6585977 CCAGTCAGGGTCTTCACAAAGATCTGCATGTT 6585946
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||||| | | |||| ||||| ||| ||||||||| ||||||||||| |
Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| | || ||||| || || || || || ||||||| ||| || || |||||
Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 6586284
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || || || ||| || || ||| || | | | | |||| | || |||
Sbjct 6586283 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACC 6586224
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| | ||| || |||||||| ||||| |||||||||||||| ||||||
Sbjct 6586223 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 6586176
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||| ||| ||||||||| ||||||||||| ||| ||| |||| |||
Sbjct 6586841 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 6586782
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| || ||| || || ||||| | || || ||||||
Sbjct 6586781 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGG 6586722
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||| | ||| || ||||||
Sbjct 6586721 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 6586662
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| ||||| |||||||| ||||| ||||||
Sbjct 6586661 CCAGTCAGGGTCTTCACGAAGATCTGCATG 6586632
>seq6387
Length=12762846
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||||||||| ||||||||||| ||| ||| | || |||
Sbjct 4540620 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 4540561
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| || |||||| ||||| || | ||||||||||||
Sbjct 4540560 AGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4540501
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | |||||||||| ||| || ||||||
Sbjct 4540500 ATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTG 4540441
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||||||||||| |||||
Sbjct 4540440 CCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412
Score = 122 bits (134), Expect = 7e-23
Identities = 155/212 (73%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||| |||||||||||| ||| ||| |||| ||||
Sbjct 4540163 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCA 4540104
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || || || ||||| |||| || ||| || ||||| || | |||||||||||| |
Sbjct 4540103 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGA 4540044
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | | | || | |||||||||| ||| || |||||||
Sbjct 4540043 TCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTGC 4539984
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
| || || |||||||| ||||| |||||||||
Sbjct 4539983 CAGTGAGGGTCTTCACGAAGATCTGCATGTTG 4539952
Score = 122 bits (134), Expect = 7e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||| ||| ||||||||| |||||||||||| ||| ||| | || |||
Sbjct 4540392 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCC 4540333
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| || ||| || ||||| || | ||||||||||||
Sbjct 4540332 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4540273
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||||| ||| || ||||||
Sbjct 4540272 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 4540213
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||| |||||||||||||| ||||||
Sbjct 4540212 CCTGTCAAGGTCTTCACAAAGATCTGCATG 4540183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394962168367975
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |