Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 109 5e-19
seq1 102 7e-17
seq2929 86.0 6e-12
>seq6387
Length=12762846
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|||||||| || ||||| ||||| || || ||||| || |||||| | || || |||||
Sbjct 4539953 AACATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCC 4540012
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| | |||| | ||||| | || ||||||||| ||| | || |||||
Sbjct 4540013 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAT 4540072
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| | || || ||||||||||| ||| |||||||| || || ||| ||
Sbjct 4540073 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTAC 4540132
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| || || || || ||||| ||||| || || | || ||||| ||
Sbjct 4540133 AACATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTCAGGGGTGG 4540182
>seq1
Length=196202544
Score = 102 bits (112), Expect = 7e-17
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
||||||| | |||| || ||||| || ||||| || || |||| || || | ||| |
Sbjct 194684921 TTTCAACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCAC 194684980
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
|| ||| ||||| || |||||||| || || || | ||| || || | |||| ||||
Sbjct 194684981 GCTGCTCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCC 194685040
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498
||||||| ||||| | |||||| || || ||||||| ||
Sbjct 194685041 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCTGAT 194685079
>seq2929
Length=111302122
Score = 86.0 bits (94), Expect = 6e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 57753 CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAAC 57812
|||||||||||||| ||||| ||| |||| || || || || || | ||||| ||||||
Sbjct 96933051 CAAGAAGTGCAAGTCACGGAAGCGCGATGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 96933110
Query 57813 GTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
| |||||||||||||| || ||||| || || ||| | |||||
Sbjct 96933111 ATACATTCAGAAATGTACAGTCTTCTCATTGACACATACATTAAGGA 96933157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445635595422000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |