Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6387 109 5e-19 seq1 102 7e-17 seq2929 86.0 6e-12 >seq6387 Length=12762846 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| || || ||||| || |||||| | || || ||||| Sbjct 4539953 AACATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCC 4540012 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | |||| | ||||| | || ||||||||| ||| | || ||||| Sbjct 4540013 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAT 4540072 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || ||||||||||| ||| |||||||| || || ||| || Sbjct 4540073 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTAC 4540132 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||| ||||| || || | || ||||| || Sbjct 4540133 AACATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTCAGGGGTGG 4540182 >seq1 Length=196202544 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| | |||| || ||||| || ||||| || || |||| || || | ||| | Sbjct 194684921 TTTCAACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCAC 194684980 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| ||||| || |||||||| || || || | ||| || || | |||| |||| Sbjct 194684981 GCTGCTCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCC 194685040 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||||||| ||||| | |||||| || || ||||||| || Sbjct 194685041 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCTGAT 194685079 >seq2929 Length=111302122 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 57753 CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAAC 57812 |||||||||||||| ||||| ||| |||| || || || || || | ||||| |||||| Sbjct 96933051 CAAGAAGTGCAAGTCACGGAAGCGCGATGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 96933110 Query 57813 GTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 | |||||||||||||| || ||||| || || ||| | ||||| Sbjct 96933111 ATACATTCAGAAATGTACAGTCTTCTCATTGACACATACATTAAGGA 96933157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445635595422000