Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 120 4e-22
seq1 116 5e-21
seq2929 105 9e-18
>seq1781
Length=149560735
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| |
Sbjct 129690759 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 129690818
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | |||||||| || |||||||| || ||||| ||||| |||||||
Sbjct 129690819 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 129690878
Query 36300 CAATAAGTCTCTCTCC 36315
||| | |||||| ||
Sbjct 129690879 CAACCACTCTCTCACC 129690894
>seq1
Length=196202544
Score = 116 bits (128), Expect = 5e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286
||| ||||||||| || | |||| | ||| ||| | | ||||||||||||||| ||
Sbjct 34370439 TTACTTCTTATTAAATGCCTCCAGTAAACGTAGCAGGTTGAGGAACAGATTGATGATGTC 34370498
Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346
|| ||| | ||||| | || | | || |||||||| || | ||| || || || |
Sbjct 34370499 CAGGTAAAGGTTGATGGCAGCCAGTATGTACTCTTCAGGGGATAACTTGTGCATCAGCAA 34370558
Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406
||| |||||||| ||||| ||||| ||||| | ||| || || ||||| | |||||
Sbjct 34370559 GTGAGTGTCATAAATAATAAATCCACAGAAGAGAAGCGCTCCGGCAGCAGCAAACACCAG 34370618
Query 9407 CTCCACTGTTTCACTTTGCACAAA 9430
||||| | ||||||| || | |||
Sbjct 34370619 CTCCATTATTTCACTGTGGAAAAA 34370642
Score = 107 bits (118), Expect = 3e-18
Identities = 92/114 (81%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| ||||| ||||||||||| || | ||||| |||||||| |||||
Sbjct 34371789 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATACGCAGTCAGTCCAAGA 34371848
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593
|| || ||||| || || ||||| ||||||| |||| |||||||||||||
Sbjct 34371849 AATACAGCAGTCGTAAGAATGAAGGCTTGCAGGACGATGGACACATCATAGAAA 34371902
>seq2929
Length=111302122
Score = 105 bits (116), Expect = 9e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| || || | || || ||||| |||||||| ||||||| ||| | || |
Sbjct 96934804 CCTCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 96934745
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 96934744 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 96934685
Query 36300 C 36300
|
Sbjct 96934684 C 96934684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657979667419000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |