Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1781 120 4e-22 seq1 116 5e-21 seq2929 105 9e-18 >seq1781 Length=149560735 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 129690759 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 129690818 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 129690819 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 129690878 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 129690879 CAACCACTCTCTCACC 129690894 >seq1 Length=196202544 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| ||||||||| || | |||| | ||| ||| | | ||||||||||||||| || Sbjct 34370439 TTACTTCTTATTAAATGCCTCCAGTAAACGTAGCAGGTTGAGGAACAGATTGATGATGTC 34370498 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||| | ||||| | || | | || |||||||| || | ||| || || || | Sbjct 34370499 CAGGTAAAGGTTGATGGCAGCCAGTATGTACTCTTCAGGGGATAACTTGTGCATCAGCAA 34370558 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| |||||||| ||||| ||||| ||||| | ||| || || ||||| | ||||| Sbjct 34370559 GTGAGTGTCATAAATAATAAATCCACAGAAGAGAAGCGCTCCGGCAGCAGCAAACACCAG 34370618 Query 9407 CTCCACTGTTTCACTTTGCACAAA 9430 ||||| | ||||||| || | ||| Sbjct 34370619 CTCCATTATTTCACTGTGGAAAAA 34370642 Score = 107 bits (118), Expect = 3e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | ||||| |||||||| ||||| Sbjct 34371789 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATACGCAGTCAGTCCAAGA 34371848 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || ||||| || || ||||| ||||||| |||| ||||||||||||| Sbjct 34371849 AATACAGCAGTCGTAAGAATGAAGGCTTGCAGGACGATGGACACATCATAGAAA 34371902 >seq2929 Length=111302122 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | || || ||||| |||||||| ||||||| ||| | || | Sbjct 96934804 CCTCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 96934745 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 96934744 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 96934685 Query 36300 C 36300 | Sbjct 96934684 C 96934684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657979667419000