Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1781 120 3e-22 seq2929 89.7 5e-13 >seq1781 Length=149560735 Score = 120 bits (132), Expect = 3e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || || || || ||||| ||||||| || | || | Sbjct 129690759 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 129690818 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| ||||||||||| || |||||||| || || |||||||||||||| | Sbjct 129690819 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 129690878 Query 14014 C 14014 | Sbjct 129690879 C 129690879 >seq2929 Length=111302122 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 14125 TCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182 ||||||||| | ||| ||||||||| ||||| || | || |||||||| || ||||| Sbjct 96933168 TCTCTTTAGAATCCTT--AATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTAT 96933111 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||||||| || ||||| || ||||| || |||| ||||||| ||| ||||| Sbjct 96933110 GTTTTCCATGGCAATCTGGAAGCCATAGAAACATCGCGCTTCCGTGACTTGCACTTC 96933054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479587229815000