Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1781 132 6e-26 seq2929 114 2e-20 >seq1781 Length=149560735 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 129690759 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 129690818 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| |||||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 129690819 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 129690878 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 129690879 CAACCACTCTCTCACC 129690894 >seq2929 Length=111302122 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | || || ||||| |||||||| ||||||| ||| | || | Sbjct 96934804 CCTCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 96934745 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 96934744 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 96934685 Query 42207 C 42207 | Sbjct 96934684 C 96934684 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| ||| |||| ||||| || || | |||||| |||||||||||||| |||||| Sbjct 96933166 TCTTTAGAATCCTTAATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATGTTT 96933107 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| ||||| || || |||||||||| || || || || || |||||| Sbjct 96933106 TCCATGGCAATCTGGAAGCCATAGAAACATCGCGCTTCCGTGACTTGCACTTCT 96933053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || ||||| || || ||||| ||||| ||| Sbjct 96936068 GACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 96936009 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || || |||||||||||||| ||||| Sbjct 96936008 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96935974 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || ||||| || || ||||| ||||| ||| Sbjct 96947392 GACATCACTCCCATCCTCTGATATTCACCTACTCGTTTCTC-AAGAAATTGGTCTTGCCT 96947334 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || || |||||||||||||| ||||| Sbjct 96947333 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 96947299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670942262591000