Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6642 93.3 3e-14 >seq6642 Length=9979828 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| ||||| || |||||||| || || | | | ||||||| | || Sbjct 6586608 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 6586549 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||| | ||||| | || || ||| ||||| ||||||||||| || || Sbjct 6586548 CTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTT 6586489 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| |||| || || || || || || || | ||| ||||| || || || Sbjct 6586488 GGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 6586429 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 6586428 CAAGGTTTTCACGAAGATCTGCAT 6586405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362075579964975