Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq6642 93.3 3e-14
>seq6642
Length=9979828
Score = 93.3 bits (102), Expect = 3e-14
Identities = 152/218 (70%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| ||||| ||||| || |||||||| || || ||||| ||||||| || | |
Sbjct 6586619 CGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 6586560
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| |||| ||||| ||| ||| || || | ||||| || | || |||||||||||
Sbjct 6586559 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTG 6586500
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || ||| ||| ||||| |||| | ||| || || ||
Sbjct 6586499 TCTTGGATCTTGGCC---TTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTG 6586443
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || | ||||| ||||| || |||||
Sbjct 6586442 ATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/231 (68%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | |||| ||||| ||||| || ||||| || || || ||||| ||||||
Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
| || | || |||| ||||| ||| ||| || || | ||||| || | ||
Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 6586284
Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
||||||||||| || | | | ||| || || | | ||| ||||| |||||| |
Sbjct 6586283 ATGCCTTCTTTATCCTGGATCTTGGCC---TTCACATTCTCAATGGTGTCACTGGGTTCA 6586227
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || || || || || || || || || || || || || || ||||||
Sbjct 6586226 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 6586176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318686397230550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |