Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 105 6e-18
seq2929 96.9 3e-15
>seq1781
Length=149560735
Score = 105 bits (116), Expect = 6e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220
|||| | || | | |||||||| || || || || || || || || | || ||||| |
Sbjct 129690747 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 129690806
Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280
| || | || || | |||||||||||||||||| ||||||||||| || || |||||||
Sbjct 129690807 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 129690866
Query 13281 CTGCTGCAAACGCTATCAACCTTTCACC 13308
|||| ||||| || | || || |||||
Sbjct 129690867 CTGCAGCAAAGGCAACCACTCTCTCACC 129690894
>seq2929
Length=111302122
Score = 96.9 bits (106), Expect = 3e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || || ||||| || ||||| || || || ||||| | |||| ||| ||
Sbjct 96934802 TCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 96934743
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| |||||| || | ||||| || || ||||| || |||||||| ||||||||||| |||
Sbjct 96934742 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 96934683
Query 13295 A 13295
|
Sbjct 96934682 A 96934682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430859095261950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |