Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq3140 181 2e-40
seq2929 181 2e-40
seq6642 172 1e-37
seq6387 143 6e-29
seq1781 116 9e-21
>seq3140
Length=8478
Score = 181 bits (200), Expect = 2e-40
Identities = 138/163 (85%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||
Sbjct 7931 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTCTTCTTCATC 7990
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||| || || |||||||||||||| ||||| ||||| ||||| || |||||
Sbjct 7991 CTGAGGAAGAAGTTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 8050
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|||||| | ||||| |||||||| ||| | ||||| |||||||
Sbjct 8051 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 8093
>seq2929
Length=111302122
Score = 181 bits (200), Expect = 2e-40
Identities = 138/163 (85%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||
Sbjct 79575007 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTCTTCTTCATC 79575066
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||| || || |||||||||||||| ||||| ||||| ||||| || |||||
Sbjct 79575067 CTGAGGAAGAAGTTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 79575126
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|||||| | ||||| |||||||| ||| | ||||| |||||||
Sbjct 79575127 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 79575169
Score = 107 bits (118), Expect = 4e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| || ||||| || || ||||| || |||||||| || ||||||||
Sbjct 96934669 GGAGAACGCGTAGTAGCATTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 96934728
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || |||||| |||||||||||||| | ||||| ||| | ||||| ||||| || |
Sbjct 96934729 TCAATTTTTTGGCTGAAGAAAAGAGGCTTAATGCCTGGACTCACTTTTTCTAATGAGCTC 96934788
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 96934789 ATCAGCAGAGATGA 96934802
Score = 96.9 bits (106), Expect = 8e-15
Identities = 103/135 (76%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703
||||| || ||| | |||||| | || ||| |||| | || ||||||||||| | |||
Sbjct 79576960 GGACA-GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTTATTATGTACATGTAT 79577018
Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763
||||| | ||||| || ||||||| | ||| |||||| |||||||||| |||| |
Sbjct 79577019 TACGGATTAGCTGCCTGTGGCCCTAAAGTTCAGAAGTATCTGTGGTGGAAACGATACTTG 79577078
Query 78764 ACTATAATGCAATTG 78778
|||||| ||||| ||
Sbjct 79577079 ACTATATTGCAACTG 79577093
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
||||||| ||||| |||||||| || || | || ||||| || || || ||||||||||
Sbjct 48326 CTTTCTGGATATTGTAGTCAGACAGCGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAA 48267
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
| || | ||| ||||||||||| ||||||
Sbjct 48266 TCAGTCGCTGCTGATCAGGAGGAATTCCT 48238
>seq6642
Length=9979828
Score = 172 bits (190), Expect = 1e-37
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || ||||| | || || || ||||| || || ||||||
Sbjct 6586406 ATCCCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 6586347
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || |||||||| || | |||||| |||||||||
Sbjct 6586346 GACAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGA 6586287
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||||||||| ||||| || || ||||| || | ||| || || |||||
Sbjct 6586286 GGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCA 6586227
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||| || || || ||||| ||||||||
Sbjct 6586226 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| || || |||||||| || || | ||||||
Sbjct 6586844 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586785
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || ||||||||||| |||||||| ||||||||||| || |||||||| |||
Sbjct 6586784 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCC 6586725
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| || || ||||| || | ||| || || || || ||||| || || || |||
Sbjct 6586724 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6586665
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || || || ||||||||
Sbjct 6586664 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
>seq6387
Length=12762846
Score = 143 bits (158), Expect = 6e-29
Identities = 150/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || |||||||| || || | || ||||| || || || |||
Sbjct 4540608 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCA 4540549
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||||||||| || || || || || || ||||| ||||| || ||
Sbjct 4540548 GCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 4540489
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| ||||| ||||| ||||| || || || ||||| ||||| | ||
Sbjct 4540488 ACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 4540429
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 4540428 TTCACAAAGATCTGCAT 4540412
>seq1781
Length=149560735
Score = 116 bits (128), Expect = 9e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 129690882 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTTGG 129690823
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| ||
Sbjct 129690822 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 129690763
Query 269258 GA 269259
||
Sbjct 129690762 GA 129690761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151052089945300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |