Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1781 127 1e-24 seq2059 116 3e-21 >seq1781 Length=149560735 Score = 127 bits (140), Expect = 1e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||| |||||||| |||| |||||| ||||| || || || ||||| | ||| Sbjct 102234824 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTC 102234883 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCT-CTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || ||||| ||| | |||| ||||| |||||||| || || | || |||||||| | Sbjct 102234884 CCCCTCTTCTCTG-GTGCAAAACCCCTGCTTATCCAGGAACTCACGTGACCCATTGGCAT 102234942 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||| ||||| || ||||| | ||||||||||||| ||||| || || Sbjct 102234943 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 102234991 >seq2059 Length=10123 Score = 116 bits (128), Expect = 3e-21 Identities = 131/170 (77%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGG-AACCCGTACACCGGTCCTAGGT 25831 |||||| |||| |||||||| |||| |||||| ||| || || || || ||||| | || Sbjct 8725 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGGAAACCATAAACTGGTCCCAAGT 8666 Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCT-CTTATCCAAAAAGTCTCTGGAACCATTGGCG 25890 | || ||||| ||| | |||| ||||| |||||||| || || | || |||||||| Sbjct 8665 CCCC-TCTTCTCTGGGTGCAAAACCCCTGCTTATCCAGGAACTCACGTGA-CCATTGGCA 8608 Query 25891 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||| ||||| || ||||| | ||||||||||||| ||||| || || Sbjct 8607 TCCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 8558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340040286101175