Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 127 1e-24
seq2059 116 3e-21
>seq1781
Length=149560735
Score = 127 bits (140), Expect = 1e-24
Identities = 131/169 (78%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832
|||||| |||| |||||||| |||| |||||| ||||| || || || ||||| | |||
Sbjct 102234824 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTC 102234883
Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCT-CTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891
|| ||||| ||| | |||| ||||| |||||||| || || | || |||||||| |
Sbjct 102234884 CCCCTCTTCTCTG-GTGCAAAACCCCTGCTTATCCAGGAACTCACGTGACCCATTGGCAT 102234942
Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
|||| ||||| || ||||| | ||||||||||||| ||||| || ||
Sbjct 102234943 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 102234991
>seq2059
Length=10123
Score = 116 bits (128), Expect = 3e-21
Identities = 131/170 (77%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGG-AACCCGTACACCGGTCCTAGGT 25831
|||||| |||| |||||||| |||| |||||| ||| || || || || ||||| | ||
Sbjct 8725 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGGAAACCATAAACTGGTCCCAAGT 8666
Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCT-CTTATCCAAAAAGTCTCTGGAACCATTGGCG 25890
| || ||||| ||| | |||| ||||| |||||||| || || | || ||||||||
Sbjct 8665 CCCC-TCTTCTCTGGGTGCAAAACCCCTGCTTATCCAGGAACTCACGTGA-CCATTGGCA 8608
Query 25891 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
||||| ||||| || ||||| | ||||||||||||| ||||| || ||
Sbjct 8607 TCCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 8558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340040286101175
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |