Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1 87.8 9e-13
seq5650 82.4 4e-11
seq4328 82.4 4e-11
>seq1
Length=196202544
Score = 87.8 bits (96), Expect = 9e-13
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 84159851 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 84159792
Query 11528 CCGTC 11532
|||||
Sbjct 84159791 CCGTC 84159787
Score = 87.8 bits (96), Expect = 9e-13
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 85755112 AAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 85755053
Query 11512 CAACTGAGCTAATGGGCCGTCG 11533
|||||||||||| ||||| ||
Sbjct 85755052 CAACTGAGCTAACCGGCCGGCG 85755031
Score = 86.0 bits (94), Expect = 3e-12
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| | || |||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct 84156987 AAAAACCAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 84156928
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||||||||||||| ||||
Sbjct 84156927 TCTAACCAACTGAGCTAACCGGCC 84156904
Score = 86.0 bits (94), Expect = 3e-12
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||||| | ||||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct 85510288 AAAATACACTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 85510229
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||||||||||||| ||||
Sbjct 85510228 TCTAACCAACTGAGCTAACCGGCC 85510205
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 84157884 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 84157825
Query 11528 CC 11529
||
Sbjct 84157824 CC 84157823
>seq5650
Length=20435342
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 764727 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 764668
Query 11528 CC 11529
||
Sbjct 764667 CC 764666
>seq4328
Length=59825302
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 49655375 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 49655316
Query 11528 CC 11529
||
Sbjct 49655315 CC 49655314
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261416386959100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |