Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq5241 141 1e-28 seq6492 140 5e-28 >seq5241 Length=29963013 Score = 141 bits (156), Expect = 1e-28 Identities = 221/312 (71%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 9908363 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 9908304 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||||||||| | ||| || || ||||| || |||||||| | |||| Sbjct 9908303 TATTGATTATTTCAAACCCCACTTTTCCACCAAAAGTGCTTGGCTTCCAGTACTCAGGGG 9908244 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||| || || |||| || ||||| ||||| ||||| || || | || | || Sbjct 9908243 AGCATATTGTATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCGCCAATTTCTACCATTG 9908184 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| |||||||| || | |||||||| || ||||| || | |||| ||| Sbjct 9908183 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 9908125 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||| ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 9908124 ATAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 9908065 Query 8977 TTTATTAATAAA 8988 |||||||| || Sbjct 9908064 ATTATTAATGAA 9908053 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || |||||||| || || || ||| ||| |||||||| || |||||| Sbjct 9906344 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 9906285 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || || ||||| |||||||| || ||||| || || || |||||||| || || || Sbjct 9906284 ACGTCACAGACTCTATTGTGTTCTCTCAGCCATATCGTTGCATACATCATTAGGCCTGGG 9906225 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| |||| || || |||| | ||| || || || || | ||||| Sbjct 9906224 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGATGCTCAGGAACATGAGGAGGG 9906165 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | || || || || | || ||||||||||| || ||||| ||| Sbjct 9906164 TAGATCATCTCTGCTTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 9906105 Query 9862 TG 9863 || Sbjct 9906104 TG 9906103 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| || || || || || || | |||| ||| Sbjct 9904446 ACCTTTAACACCCATTGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 9904387 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| ||||||||||| | ||| |||||| ||||| | || Sbjct 9904386 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAACTGTAGTCACTATTGTATGTTGG 9904327 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448 |||||||||||||| | ||||| ||||| || |||| Sbjct 9904326 TGGGCTGTCAATCAAGTGTGATCTCGCTGAAAGAGAAAAA 9904287 >seq6492 Length=10956400 Score = 140 bits (154), Expect = 5e-28 Identities = 209/297 (70%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | |||||||| || |||||| || || || || | | ||| Sbjct 9255195 GGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGGGATGCTG 9255136 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||||||| | || || |||| || ||||| ||||| |||||||| | |||| Sbjct 9255135 TCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCTGGGG 9255076 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| | | || || || || ||||| ||||| || | ||| | |||| Sbjct 9255075 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCCACCATGC 9255016 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || |||||| ||||||| |||| || || | || ||||| | || ||||||| Sbjct 9255015 TTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAATCCTGGATAAAACTCCA 9254956 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||| ||||||||||| || || || || || || || | |||| ||||||| Sbjct 9254955 GAGCGTCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTGTCCTCCTCTCCTG 9254899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708316892254000