Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq5241 141 1e-28
seq6492 140 5e-28
>seq5241
Length=29963013
Score = 141 bits (156), Expect = 1e-28
Identities = 221/312 (71%), Gaps = 3/312 (1%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| || ||| | |||| || ||| | | |||
Sbjct 9908363 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 9908304
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||||||||| | ||| || || ||||| || |||||||| | ||||
Sbjct 9908303 TATTGATTATTTCAAACCCCACTTTTCCACCAAAAGTGCTTGGCTTCCAGTACTCAGGGG 9908244
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||| || || |||| || ||||| ||||| ||||| || || | || | ||
Sbjct 9908243 AGCATATTGTATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCGCCAATTTCTACCATTG 9908184
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917
| ||||| |||||||| || | |||||||| || ||||| || | |||| |||
Sbjct 9908183 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 9908125
Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976
| ||| || |||||||| ||||| | ||||| ||||| ||||| |||||||||||
Sbjct 9908124 ATAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 9908065
Query 8977 TTTATTAATAAA 8988
|||||||| ||
Sbjct 9908064 ATTATTAATGAA 9908053
Score = 134 bits (148), Expect = 2e-26
Identities = 175/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||| || |||||||| || || || ||| ||| |||||||| || ||||||
Sbjct 9906344 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 9906285
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
|| || || ||||| |||||||| || ||||| || || || |||||||| || || ||
Sbjct 9906284 ACGTCACAGACTCTATTGTGTTCTCTCAGCCATATCGTTGCATACATCATTAGGCCTGGG 9906225
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| |||||| |||| || || |||| | ||| || || || || | |||||
Sbjct 9906224 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGATGCTCAGGAACATGAGGAGGG 9906165
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | | || || || || | || ||||||||||| || ||||| |||
Sbjct 9906164 TAGATCATCTCTGCTTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 9906105
Query 9862 TG 9863
||
Sbjct 9906104 TG 9906103
Score = 86.0 bits (94), Expect = 9e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | || |||||||| || || || || || || | |||| |||
Sbjct 9904446 ACCTTTAACACCCATTGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 9904387
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
|||||| |||||||| ||||||||||| | ||| |||||| ||||| | ||
Sbjct 9904386 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAACTGTAGTCACTATTGTATGTTGG 9904327
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAACAAGCAAAA 10448
|||||||||||||| | ||||| ||||| || ||||
Sbjct 9904326 TGGGCTGTCAATCAAGTGTGATCTCGCTGAAAGAGAAAAA 9904287
>seq6492
Length=10956400
Score = 140 bits (154), Expect = 5e-28
Identities = 209/297 (70%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
||||||| | |||||||| || |||||| || || || || | | |||
Sbjct 9255195 GGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGGGATGCTG 9255136
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
||||||||||| | || || |||| || ||||| ||||| |||||||| | ||||
Sbjct 9255135 TCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCTGGGG 9255076
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| |||| | | || || || || ||||| ||||| || | ||| | ||||
Sbjct 9255075 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCCACCATGC 9255016
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || |||||| ||||||| |||| || || | || ||||| | || |||||||
Sbjct 9255015 TTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAATCCTGGATAAAACTCCA 9254956
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
||| ||||||||||| || || || || || || || | |||| |||||||
Sbjct 9254955 GAGCGTCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTGTCCTCCTCTCCTG 9254899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708316892254000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |