Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6642 125 6e-24 seq6387 120 3e-22 >seq6642 Length=9979828 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||||| |||| || || ||||| || | ||| || || | Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || ||||||| || || |||||||| |||||| Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 6586284 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||| || | | |||||| | | || || Sbjct 6586283 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACC 6586224 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || || ||||||||||||||||||| Sbjct 6586223 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 6586175 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| ||||| |||| || || ||||| || | ||| || || | Sbjct 6586175 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586116 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| || || ||||||| || || |||||||| |||||| Sbjct 6586115 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGA 6586056 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| || | | |||||| | | || || Sbjct 6586055 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 6585996 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 || | |||||||| || ||||| || || |||||||||||||||||| |||| Sbjct 6585995 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTTAC 6585943 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| ||||| |||| || || || || || | ||| || || | Sbjct 6586631 CCTCCCCTCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 6586572 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || |||||||| || || ||||||| || || |||||||| |||||| Sbjct 6586571 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGA 6586512 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || ||||| || | | |||||| | | || || Sbjct 6586511 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACC 6586452 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| | |||||||| ||||||||||| Sbjct 6586451 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||| || || ||||| || | ||| || || || ||| Sbjct 6586847 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 6586788 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || |||| || | || |||||||| |||||||| ||||||||| Sbjct 6586787 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTG 6586728 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | |||||| | | || || || | |||||| Sbjct 6586727 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 6586668 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || ||||| ||||||||||||| Sbjct 6586667 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 6586631 >seq6387 Length=12762846 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| |||| ||||| |||| || || ||||| || | ||| || ||| | Sbjct 4540410 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4540351 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| |||||||| || || ||||||| | || |||||||| || ||| Sbjct 4540350 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 4540291 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| ||| | | |||||| | | ||||| Sbjct 4540290 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACC 4540231 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || | || ||||||||||||||||||| Sbjct 4540230 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCATGC 4540182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || ||||| || | ||| || || || ||| | Sbjct 4540626 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 4540567 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || || ||||| || ||||| || || ||| Sbjct 4540566 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTG 4540507 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | ||||| | | || || || | |||||| Sbjct 4540506 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATG 4540447 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | || ||||||||||||||||| Sbjct 4540446 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| || ||||| || | ||| || ||| || ||| || |||| Sbjct 4540163 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCA 4540104 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || || | ||||| | || |||||||| || ||||| || || ||||| | | Sbjct 4540103 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGA 4540044 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || |||||||| ||| || ||| | | || || || | |||||||| || | Sbjct 4540043 TCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTGC 4539984 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| || || ||||| |||||||||||| Sbjct 4539983 CAGTGAGGGTCTTCACGAAGATCTGCATG 4539955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448159654551000