Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6642 91.5 1e-13 seq6387 89.7 4e-13 seq2929 82.4 7e-11 >seq6642 Length=9979828 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| || ||| ||| Sbjct 6586633 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6586692 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||||||||| ||||| ||||| Sbjct 6586693 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGATCAG 6586752 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| ||||||| | |||||||| || ||||| Sbjct 6586753 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGA 6586787 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || ||||| || | || ||| |||| || ||| ||| Sbjct 6586405 ATGCAGATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6586464 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || ||||| |||||||||||||| ||||||||||| Sbjct 6586465 GACACAATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 6586524 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | |||||||| || ||||| | | | | | || || ||| Sbjct 6586525 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 6586584 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| || || | ||| | ||| | | |||| ||||| Sbjct 6586585 ATCCAGAAAGAGTCCACCCTGCATCTGGTGCTGCGTCTGAGGGGAGG 6586631 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| || | || ||| |||| || ||| || Sbjct 6585946 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 6586005 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||| ||| | || || ||||| ||||| |||||||| ||||||||| Sbjct 6586006 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGAT 6586065 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || ||||| |||| | | |||||||| || ||||| Sbjct 6586066 CAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGA 6586103 >seq6387 Length=12762846 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | || ||| | || || || ||| | Sbjct 4540412 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAACCCAGC 4540471 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| ||||| || ||||| || ||||||||| Sbjct 4540472 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAA 4540531 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | |||||||| || ||||||| Sbjct 4540532 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 4540568 >seq2929 Length=111302122 Score = 82.4 bits (90), Expect = 7e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 104593 TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATA 104652 ||||| ||||||||||| ||||| ||||| |||||||| |||||||| || || | ||| Sbjct 96936047 TATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCTTCCAGAGAGATGTTCTCCATG 96935988 Query 104653 AATTCGAAAGGATTC 104667 || || ||||||||| Sbjct 96935987 AAATCAAAAGGATTC 96935973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429812994638625