Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq6642 113 4e-20
seq6387 109 4e-19
>seq6642
Length=9979828
Score = 113 bits (124), Expect = 4e-20
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| |||||| ||||||||||| || ||||||||||| | || ||| ||||
Sbjct 6586845 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 6586786
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| ||| |||| |||| ||| || || ||| | ||| ||||||||
Sbjct 6586785 TTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTC 6586726
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || |||||| | | | ||||| | |||||| || | |||||||
Sbjct 6586725 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 6586668
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||| || || || || ||||||||
Sbjct 6586667 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
Score = 107 bits (118), Expect = 2e-18
Identities = 164/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | || | ||| |||| |||||| ||||||||||| || ||||||||||| | |
Sbjct 6586175 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586116
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| |||| |||| || ||||| ||| | || | || ||| || || |||
Sbjct 6586115 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGA 6586056
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| || ||||| || || || |||||| | | | ||||| | ||||||
Sbjct 6586055 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAA 6585998
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
|| | ||||||||| || || ||||| || || ||||| |||||||| ||
Sbjct 6585997 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 6585946
Score = 102 bits (112), Expect = 7e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | || | ||| |||| |||||| |||||||| || || ||||||||||| | |
Sbjct 6586631 CCTCCCCTCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 6586572
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| |||| |||| || ||||| ||| | || | || ||| || || |||
Sbjct 6586571 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGA 6586512
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| |||||||| || || || |||||| | | | ||||| | ||||||
Sbjct 6586511 ATGCCTTCTTTGTCTTGGATCTTGGC--CTTCACATTTTCAATTGTGTCACTGGGCTCAA 6586454
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || |||| ||||| || || ||||||||
Sbjct 6586453 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | ||| |||| |||||| ||||||||||| || ||||||||||| |
Sbjct 6586404 CCCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 6586345
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| ||| | || |||| || || || ||| | || | || ||| || || |||
Sbjct 6586344 CAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 6586285
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| ||| ||||| || || || || |||||| | | | ||||| | ||| ||
Sbjct 6586284 AATGCCTTCTTTATCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGTTCA 6586227
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || ||||| || || ||||| ||||||||
Sbjct 6586226 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
>seq6387
Length=12762846
Score = 109 bits (120), Expect = 4e-19
Identities = 157/219 (72%), Gaps = 12/219 (5%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| ||||||||||| || ||||||||||| | || ||| |||||
Sbjct 4540624 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT----GCGTC 4540569
Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838
| |||| || ||||| ||| | || |||| |||||| || || | |||||| |
Sbjct 4540568 CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCT 4540509
Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896
|||| || || || |||||| | | | ||||||| ||| ||| |||| |||
Sbjct 4540508 TGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGT 4540451
Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||||| || || |||| || || ||||| ||||||||
Sbjct 4540450 GATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412
Score = 107 bits (118), Expect = 2e-18
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||| | || | ||| |||| |||||| ||||||||||| || |||||||||||||
Sbjct 4540411 CCCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 4540352
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| || | || |||| || ||||| ||| | || |||| ||| || || ||
Sbjct 4540351 CAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 4540292
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| |||||| ||||| || || || |||||| | | | ||||| | ||||||
Sbjct 4540291 AATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCG 4540234
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||||||| || || |||| || || ||||| ||||||||
Sbjct 4540233 ACCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/219 (69%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| || | ||| || ||||||||||| || ||||||||||||| || ||| ||||
Sbjct 4540168 CAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 4540109
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| || | || |||| ||| || || || | |||||| |||||
Sbjct 4540108 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTC 4540049
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || ||| || | | | || || | ||| ||| |||| |||||||
Sbjct 4540048 CTGGATCTTGGC--CTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATG 4539991
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| || || || || || || || || |||||||| |||
Sbjct 4539990 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTTG 4539952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404972103690250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |