Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2929 89.7 6e-13 >seq2929 Length=111302122 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||| || || | ||| |||||||| ||||| | || ||||| ||||| ||| Sbjct 96933151 ATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGCAATCTGG 96933092 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 || || |||||||||| |||||||||| |||||||||||| Sbjct 96933091 AAGCCATAGAAACATCGCGCTTCCGTGACTTGCACTTCTTGA 96933050 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 |||| |||||| |||||||| ||||| |||||| |||||||| || || |||||||| Sbjct 96934754 CCTCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACT 96934695 Query 93224 GCTGCAAATGCCACAATACGTTC 93246 ||||||||||| || | ||||| Sbjct 96934694 GCTGCAAATGCTACTACGCGTTC 96934672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556697396159000