Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq6642 96.9 3e-15
>seq6642
Length=9979828
Score = 96.9 bits (106), Expect = 3e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| || || || || |||||| || || ||||||
Sbjct 6586373 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTACCA 6586314
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| | | ||| || || ||||||||||||||||| || ||||| ||
Sbjct 6586313 GCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 6586254
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| ||| || || | ||| | || ||||| ||||| ||
Sbjct 6586253 ACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 6586194
Query 114366 TTTACAAAAATCTGCATGGCT 114386
|| ||||| ||||||||| ||
Sbjct 6586193 TTCACAAAGATCTGCATGCCT 6586173
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || |||||||| || || || || ||||| || || || |||
Sbjct 6586601 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 6586542
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| | | ||| || || |||||||||||||||||||| ||||| ||
Sbjct 6586541 GCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 6586482
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | ||||| ||||| ||| || || || | ||| | || ||||| |||| |||
Sbjct 6586481 ACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTT 6586422
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 6586421 TTCACGAAGATCTGCAT 6586405
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| || || || || ||||| || || || |||
Sbjct 6586829 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 6586770
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| | || || | ||| || || |||||||||||||||||||| ||||| ||
Sbjct 6586769 GCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 6586710
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || || | ||| | || ||||| ||||| ||
Sbjct 6586709 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 6586650
Query 114366 TTTACAAAAATCTGCATGGCT 114386
|| || || ||||||||| ||
Sbjct 6586649 TTCACGAAGATCTGCATGCCT 6586629
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| || || || || ||||| || || || |||
Sbjct 6586145 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 6586086
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| | | ||| || || |||||||||||||| ||||| ||||| ||
Sbjct 6586085 GCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTC 6586026
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || || | ||| | || ||||| ||||| ||
Sbjct 6586025 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 6585966
Query 114366 TTTACAAAAATCTGCATG 114383
|| ||||| |||||||||
Sbjct 6585965 TTCACAAAGATCTGCATG 6585948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420014198891700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |