Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 100 5e-16 seq1781 84.2 4e-11 >seq1 Length=196202544 Score = 100 bits (110), Expect = 5e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || || ||||||||||| ||| ||||| |||| | |||| Sbjct 194684926 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 194684985 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || |||||||||||| | | || | ||| ||||||| ||| | |||||| ||| Sbjct 194684986 TCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGC 194685045 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 194685046 TCCAGGTAGA 194685055 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT 244380 ||| |||||||| || ||||| || || || || || | ||| || |||| Sbjct 194681518 CCCTTTGCTGACAGGAGAACCCTCATATGTTTCATACGGCCCCTGCTGCTCAGCAAGCTC 194681577 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 |||||| | || || || | || || |||||||| |||||| || ||||| | ||| Sbjct 194681578 ACAGCTAGCTTCCAGAGCACCATAATAAATGGTCTCAAAGATCTGCTGGTTCAGG-CGCT 194681636 Query 244441 G-GCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 | |||| | | | | |||||||| | ||||| |||||| | || ||||| ||||| Sbjct 194681637 GCGCCT--CAGGACTTTCGAAGGGGAACCTCATCAGGATGAAGGCATCAGCCAGGCCCTG 194681694 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||| || ||||| ||||| | ||| || ||||||||||| Sbjct 194681695 CACACCAATGCCAATGGGACGGTGGCGTCTGTTGGAGCGC 194681734 >seq1781 Length=149560735 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| | || || Sbjct 129690894 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCT 129690835 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 129690834 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 129690775 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 129690774 ATTAGCAGAGATGAGG 129690759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944062095466000