Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 104 2e-17
seq6642 96.9 3e-15
seq123 91.5 1e-13
seq17293 86.0 5e-12
seq11934 86.0 5e-12
seq11613 86.0 5e-12
seq11202 86.0 5e-12
seq742 86.0 5e-12
seq197 86.0 5e-12
seq172 86.0 5e-12
seq928 82.4 6e-11
>seq6387
Length=12762846
Score = 104 bits (114), Expect = 2e-17
Identities = 106/136 (78%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||| |||||||||||||| || ||| ||||||||| |||||||| || | |
Sbjct 4540410 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4540351
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || ||| | || |||| |||||||| ||||| ||||| | ||||||||| ||
Sbjct 4540350 AGAGTG-CGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 4540292
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 4540291 AATGCCCTCCTTGTCC 4540276
>seq6642
Length=9979828
Score = 96.9 bits (106), Expect = 3e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||| |||||||||||||| || ||| ||||||||| |||||||| || | |
Sbjct 6586175 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586116
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| ||| |||| |||| |||||||| ||||| |||| | |||||||||
Sbjct 6586115 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATC 6586063
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || || || |||||||||||||| || ||| ||||||||| |||||||| || | |
Sbjct 6586859 CCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586800
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| ||| |||| |||| |||||||| ||||| ||||| | ||||||||| ||
Sbjct 6586799 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGA 6586740
Query 34021 ACGCTCTCTTTGTCC 34035
| || |||||||||
Sbjct 6586739 ATGCCTTCTTTGTCC 6586725
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||| |||||||||||||| || ||| ||| ||||| |||||||| || | |
Sbjct 6586631 CCTCCCCTCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 6586572
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| ||| |||| |||| |||||||| ||||| |||| | ||||||||| ||
Sbjct 6586571 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGA 6586512
Query 34021 ACGCTCTCTTTGTC 34034
| || ||||||||
Sbjct 6586511 ATGCCTTCTTTGTC 6586498
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| |||||||| |||||||||||||| || ||| ||||||||| |||||||| || | |
Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| ||| | || |||| ||||| || ||||| |||| | |||||||||
Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATC 6586291
>seq123
Length=18024
Score = 91.5 bits (100), Expect = 1e-13
Identities = 74/86 (86%), Gaps = 4/86 (5%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586
|||||||| |||||||||||||||| |||||||||||||| ||| || | | ||||||
Sbjct 16461 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGAGGGAGCGACCAAAGGAA 16402
Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612
||| ||||||| || |||||||||||
Sbjct 16401 CCATAACTGATTTAATGAGCCATTCG 16376
Score = 91.5 bits (100), Expect = 1e-13
Identities = 74/86 (86%), Gaps = 4/86 (5%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389
|||||||| |||||||||||||||| |||||||||||||| ||| || | | ||||||
Sbjct 16461 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGAGGGAGCGACCAAAGGAA 16402
Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415
||| ||||||| || |||||||||||
Sbjct 16401 CCATAACTGATTTAATGAGCCATTCG 16376
>seq17293
Length=5698
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 5575 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 5516
Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612
|||| ||||||| || |||||||||||
Sbjct 5515 ACCATAACTGATTTAATGAGCCATTCG 5489
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 5575 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 5516
Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415
|||| ||||||| || |||||||||||
Sbjct 5515 ACCATAACTGATTTAATGAGCCATTCG 5489
>seq11934
Length=12084
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 11161 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 11102
Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612
|||| ||||||| || |||||||||||
Sbjct 11101 ACCATAACTGATTTAATGAGCCATTCG 11075
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 11161 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 11102
Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415
|||| ||||||| || |||||||||||
Sbjct 11101 ACCATAACTGATTTAATGAGCCATTCG 11075
>seq11613
Length=12652
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 9266 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 9207
Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612
|||| ||||||| || |||||||||||
Sbjct 9206 ACCATAACTGATTTAATGAGCCATTCG 9180
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 9266 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 9207
Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415
|||| ||||||| || |||||||||||
Sbjct 9206 ACCATAACTGATTTAATGAGCCATTCG 9180
>seq11202
Length=13443
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 12569 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 12510
Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612
|||| ||||||| || |||||||||||
Sbjct 12509 ACCATAACTGATTTAATGAGCCATTCG 12483
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 12569 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 12510
Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415
|||| ||||||| || |||||||||||
Sbjct 12509 ACCATAACTGATTTAATGAGCCATTCG 12483
>seq742
Length=7692
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 3078 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 3019
Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612
|||| ||||||| || |||||||||||
Sbjct 3018 ACCATAACTGATTTAATGAGCCATTCG 2992
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 3078 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 3019
Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415
|||| ||||||| || |||||||||||
Sbjct 3018 ACCATAACTGATTTAATGAGCCATTCG 2992
>seq197
Length=15317
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 2925 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 2866
Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612
|||| ||||||| || |||||||||||
Sbjct 2865 ACCATAACTGATTTAATGAGCCATTCG 2839
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 2925 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 2866
Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415
|||| ||||||| || |||||||||||
Sbjct 2865 ACCATAACTGATTTAATGAGCCATTCG 2839
>seq172
Length=15898
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 13859 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 13800
Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612
|||| ||||||| || |||||||||||
Sbjct 13799 ACCATAACTGATTTAATGAGCCATTCG 13773
Score = 86.0 bits (94), Expect = 5e-12
Identities = 74/87 (85%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388
|||||||| |||||||||||||||| |||||||||||||| | || || | | |||||
Sbjct 13859 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 13800
Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415
|||| ||||||| || |||||||||||
Sbjct 13799 ACCATAACTGATTTAATGAGCCATTCG 13773
>seq928
Length=6501
Score = 82.4 bits (90), Expect = 6e-11
Identities = 73/86 (85%), Gaps = 4/86 (5%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTA-AGAT-CTAAGGAA 115586
|||||||| |||||||||||||||| |||||||||||||| ||| || | ||||||
Sbjct 5997 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGAGGGGAGCGACAAAGGAA 5938
Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612
||| ||||||| || |||||||||||
Sbjct 5937 CCATAACTGATTTAATGAGCCATTCG 5912
Score = 82.4 bits (90), Expect = 6e-11
Identities = 73/86 (85%), Gaps = 4/86 (5%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTA-AGAT-CTAAGGAA 114389
|||||||| |||||||||||||||| |||||||||||||| ||| || | ||||||
Sbjct 5997 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGAGGGGAGCGACAAAGGAA 5938
Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415
||| ||||||| || |||||||||||
Sbjct 5937 CCATAACTGATTTAATGAGCCATTCG 5912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396948799826950
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