Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6387 104 2e-17 seq6642 96.9 3e-15 seq123 91.5 1e-13 seq17293 86.0 5e-12 seq11934 86.0 5e-12 seq11613 86.0 5e-12 seq11202 86.0 5e-12 seq742 86.0 5e-12 seq197 86.0 5e-12 seq172 86.0 5e-12 seq928 82.4 6e-11 >seq6387 Length=12762846 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||||||||| || ||| ||||||||| |||||||| || | | Sbjct 4540410 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4540351 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || ||| | || |||| |||||||| ||||| ||||| | ||||||||| || Sbjct 4540350 AGAGTG-CGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 4540292 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 4540291 AATGCCCTCCTTGTCC 4540276 >seq6642 Length=9979828 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||||||||| || ||| ||||||||| |||||||| || | | Sbjct 6586175 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586116 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| |||| |||| |||||||| ||||| |||| | ||||||||| Sbjct 6586115 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATC 6586063 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || |||||||||||||| || ||| ||||||||| |||||||| || | | Sbjct 6586859 CCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586800 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| |||| |||||||| ||||| ||||| | ||||||||| || Sbjct 6586799 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGA 6586740 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||||||||| Sbjct 6586739 ATGCCTTCTTTGTCC 6586725 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||||||||| || ||| ||| ||||| |||||||| || | | Sbjct 6586631 CCTCCCCTCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 6586572 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| |||| |||||||| ||||| |||| | ||||||||| || Sbjct 6586571 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGA 6586512 Query 34021 ACGCTCTCTTTGTC 34034 | || |||||||| Sbjct 6586511 ATGCCTTCTTTGTC 6586498 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| |||||||||||||| || ||| ||||||||| |||||||| || | | Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||| ||||| || ||||| |||| | ||||||||| Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATC 6586291 >seq123 Length=18024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| ||| || | | |||||| Sbjct 16461 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGAGGGAGCGACCAAAGGAA 16402 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 16401 CCATAACTGATTTAATGAGCCATTCG 16376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| ||| || | | |||||| Sbjct 16461 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGAGGGAGCGACCAAAGGAA 16402 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 16401 CCATAACTGATTTAATGAGCCATTCG 16376 >seq17293 Length=5698 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 5575 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 5516 Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612 |||| ||||||| || ||||||||||| Sbjct 5515 ACCATAACTGATTTAATGAGCCATTCG 5489 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 5575 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 5516 Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415 |||| ||||||| || ||||||||||| Sbjct 5515 ACCATAACTGATTTAATGAGCCATTCG 5489 >seq11934 Length=12084 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 11161 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 11102 Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612 |||| ||||||| || ||||||||||| Sbjct 11101 ACCATAACTGATTTAATGAGCCATTCG 11075 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 11161 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 11102 Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415 |||| ||||||| || ||||||||||| Sbjct 11101 ACCATAACTGATTTAATGAGCCATTCG 11075 >seq11613 Length=12652 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 9266 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 9207 Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612 |||| ||||||| || ||||||||||| Sbjct 9206 ACCATAACTGATTTAATGAGCCATTCG 9180 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 9266 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 9207 Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415 |||| ||||||| || ||||||||||| Sbjct 9206 ACCATAACTGATTTAATGAGCCATTCG 9180 >seq11202 Length=13443 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 12569 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 12510 Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612 |||| ||||||| || ||||||||||| Sbjct 12509 ACCATAACTGATTTAATGAGCCATTCG 12483 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 12569 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 12510 Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415 |||| ||||||| || ||||||||||| Sbjct 12509 ACCATAACTGATTTAATGAGCCATTCG 12483 >seq742 Length=7692 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 3078 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 3019 Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612 |||| ||||||| || ||||||||||| Sbjct 3018 ACCATAACTGATTTAATGAGCCATTCG 2992 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 3078 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 3019 Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415 |||| ||||||| || ||||||||||| Sbjct 3018 ACCATAACTGATTTAATGAGCCATTCG 2992 >seq197 Length=15317 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 2925 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 2866 Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612 |||| ||||||| || ||||||||||| Sbjct 2865 ACCATAACTGATTTAATGAGCCATTCG 2839 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 2925 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 2866 Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415 |||| ||||||| || ||||||||||| Sbjct 2865 ACCATAACTGATTTAATGAGCCATTCG 2839 >seq172 Length=15898 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 115585 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 13859 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 13800 Query 115586 ACCAAAACTGATATATTGAGCCATTCG 115612 |||| ||||||| || ||||||||||| Sbjct 13799 ACCATAACTGATTTAATGAGCCATTCG 13773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/87 (85%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG-AGTAAG--ATCTAAGGA 114388 |||||||| |||||||||||||||| |||||||||||||| | || || | | ||||| Sbjct 13859 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGGAGGGAGCGACCAAAGGA 13800 Query 114389 ACCAAAACTGATATATTGAGCCATTCG 114415 |||| ||||||| || ||||||||||| Sbjct 13799 ACCATAACTGATTTAATGAGCCATTCG 13773 >seq928 Length=6501 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTA-AGAT-CTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| ||| || | |||||| Sbjct 5997 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGAGGGGAGCGACAAAGGAA 5938 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 5937 CCATAACTGATTTAATGAGCCATTCG 5912 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTA-AGAT-CTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| ||| || | |||||| Sbjct 5997 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGAGGGGAGCGACAAAGGAA 5938 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 5937 CCATAACTGATTTAATGAGCCATTCG 5912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396948799826950