Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq6642 116 4e-21
seq6105 93.3 5e-14
seq6387 91.5 2e-13
seq1 91.5 2e-13
>seq6642
Length=9979828
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| ||||| | |||| ||||| ||||| ||| |||||| || || ||||| |||| |
Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || ||| | || || |||||||||||||| || || | | |||||| || | ||
Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 6586284
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| || || || ||| ||| || || | || | | ||||| || | ||| ||
Sbjct 6586283 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACC 6586224
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| |||||||| ||||| || || ||||| |||||||| |||||
Sbjct 6586223 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
>seq6105
Length=18407460
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 4700485 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4700426
Query 57066 ATACTACCGAGGATTG 57081
|||||| |||||| ||
Sbjct 4700425 ATACTAACGAGGAGTG 4700410
>seq6387
Length=12762846
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 4536555 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4536496
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 4536495 ATACTAACGAGGA 4536483
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 4537177 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4537118
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 4537117 TACTAACGAGGA 4537106
>seq1
Length=196202544
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 46660440 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 46660499
Query 57067 TACTACCGAGGATTG 57081
||||| |||||| ||
Sbjct 46660500 TACTAACGAGGAGTG 46660514
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 84158303 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 84158362
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 84158363 ATACTAACGAGGA 84158375
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 46660262 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 46660203
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 46660202 TACTAACGAGGA 46660191
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 84159615 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 84159556
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 84159555 TACTAACGAGGA 84159544
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 84160257 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 84160198
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 84160197 TACTAACGAGGA 84160186
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 45718661 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 45718602
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 45718601 TACTAACGAGGA 45718590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543053400994000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |