Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq6642 152 5e-32
seq6387 122 9e-23
>seq6642
Length=9979828
Score = 152 bits (168), Expect = 5e-32
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || || ||||| || |||||||| || | | ||||||| |||||
Sbjct 6586616 AGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586557
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || | || |||||| ||||||||||| |||||||| |||
Sbjct 6586556 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 6586497
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | ||| |||| || || || || | || | ||||
Sbjct 6586496 TGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6586437
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| ||||| ||||| ||||| || |||||
Sbjct 6586436 TTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 140 bits (154), Expect = 3e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || || || || || |||||||| || | | ||||||| |||||
Sbjct 6586844 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586785
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| |||| |||| |||||| || |||||||| |||||||| ||
Sbjct 6586784 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCC 6586725
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || || || || | || | ||||
Sbjct 6586724 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6586665
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || ||||| || |||||
Sbjct 6586664 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || || || || || |||||||| || | | ||||||| |||||
Sbjct 6586160 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 6586101
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || | || |||||| ||||||||||| ||||| || |||
Sbjct 6586100 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 6586041
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || || || || | || | ||||
Sbjct 6586040 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 6585981
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||| |||| || || || || || ||||| ||
Sbjct 6585980 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 6585946
>seq6387
Length=12762846
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || || || || || |||||||| || | | ||||||| |||||
Sbjct 4540167 AGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 4540108
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || |||| |||||| ||||| ||||| || || || ||
Sbjct 4540107 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 4540048
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | ||||||| || ||||| || | || | ||||
Sbjct 4540047 TGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTC 4539988
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||| || | || || ||||| || ||||| ||
Sbjct 4539987 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTT 4539953
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || || || || || |||||||| || | | |||||| | |||
Sbjct 4540395 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 4540336
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| |||||| ||||| ||||| || || || ||
Sbjct 4540335 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 4540276
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || ||| | || |||| || || || || | || | ||||
Sbjct 4540275 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 4540216
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| ||||| || || || || || |||||
Sbjct 4540215 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || || || || || |||||||| || | | |||||| | |||
Sbjct 4540623 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 4540564
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| ||| || ||||| ||||| || || || ||
Sbjct 4540563 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTGTCC 4540504
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || ||| | || || | || ||||| || | || | ||||
Sbjct 4540503 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTC 4540444
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| ||||| || || || || || |||||
Sbjct 4540443 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499498185479000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |