Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6642 89.7 5e-13 seq1 87.8 2e-12 >seq6642 Length=9979828 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || |||| || | ||| | | | |||||||| || ||||||||||| Sbjct 6586176 GCCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 6586117 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || || || || || | | |||| | | ||| || || ||||| Sbjct 6586116 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGG 6586057 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 6586056 AATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 6585997 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || |||||||| || || ||||| ||||||||| Sbjct 6585996 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 6585948 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | |||||||| || ||||||||||| || || ||| | Sbjct 6586847 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 6586788 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || || || | | | || || | ||| || || ||||| || ||||||||| Sbjct 6586787 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTG 6586728 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || || | | || | |||||| | | ||| ||||||| || | Sbjct 6586727 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 6586668 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || || |||||||| || || || || ||||||||| || Sbjct 6586667 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 6586629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || |||| || | ||| | | | |||||||| || ||||||||||| | Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || || || ||||| | | |||| | | ||| || || ||||| Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 6586284 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || ||| || || | | || | |||||| | | || ||| Sbjct 6586283 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACC 6586224 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || | || || |||||||| || || ||||| ||||||||| || Sbjct 6586223 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 6586173 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | ||| | | | ||||| || || ||||||||||| Sbjct 6586632 GCCTCCCCTCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 6586573 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || || || || || | | |||| | | ||| || || ||||| Sbjct 6586572 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGG 6586513 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | ||| | ||||| | | ||| || Sbjct 6586512 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAAC 6586453 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || ||||||| ||||| || || |||||||| Sbjct 6586452 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405 >seq1 Length=196202544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | ||| || ||||||||||| ||| ||||| || ||||||||| Sbjct 194683622 TACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 194683681 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 153761 || || | ||||| | ||||||| | |||||||| ||| ||| ||||| || | | Sbjct 194683682 CTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCAGTCTCTGTCTGTGAT 194683741 Query 153762 TCGACGAT 153769 |||| ||| Sbjct 194683742 TCGATGAT 194683749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496116778002000