Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq5241 136 6e-27 seq6492 107 3e-18 >seq5241 Length=29963013 Score = 136 bits (150), Expect = 6e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || ||||| | |||||| ||| |||| || || || || ||||| | || || ||| Sbjct 9906335 GTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAGACGTCACAG 9906276 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || || |||||||||||||||||||| || || |||||||||| || || || || ||| Sbjct 9906275 ACTCTATTGTGTTCTCTCAGCCATATCGTTGCATACATCATTAGGCCTGGGACCAAGCCA 9906216 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | ||| || | ||| |||||| || || || | || | || | ||| Sbjct 9906215 AACACCTCCTGCCCAACAGAAAACTGCAGATGCTCAGGAACATGAGGAGGGTAGATCATC 9906156 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | || || || || || || || ||||||||||| || ||||| | ||| Sbjct 9906155 TCTGCTTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATCTG 9906103 Score = 120 bits (132), Expect = 4e-22 Identities = 204/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 9908363 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 9908304 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || || ||||| || ||||||||| | |||| Sbjct 9908303 TATTGATTATTTCAAACCCCACTTTTCCACCAAAAGTGCTTGGCTTCCAGTACTCAGGGG 9908244 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||| || || |||| || ||||||| ||| ||||| || || | || | || Sbjct 9908243 AGCATATTGTATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCGCCAATTTCTACCATTG 9908184 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || | || ||||| || | | ||| | || ||||| | Sbjct 9908183 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTACAAGAAGGCCTGGATACAGTTCCA 9908124 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||| | || ||||| || || || || ||| Sbjct 9908123 TAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCT 9908068 Score = 89.7 bits (98), Expect = 7e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | | |||| | || ||| ||||| Sbjct 9907555 ATGGAGTTGTTGTAGAGGAACTGCTGGAATGTGTACTCCTGGTTATGTATCTGAAAAGTG 9907496 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| |||| || |||||||| || || || |||||||||||| Sbjct 9907495 TCAGGCAGAAGGGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCGATTCGGTTCTGG 9907436 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| |||||||| | | | ||| ||||| | Sbjct 9907435 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGGTCAAACTTCAATTTGAAATGGTAGC 9907378 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | ||||| ||||| | | || | || || || ||||| || || Sbjct 9907377 CACTTAAGTGCTGCACATAATCTTCAATAACTATCTTGATCGTTTCTCCTGT 9907326 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | ||||| ||||| | ||||||| ||| || || || ||| || Sbjct 9903592 CTTACGTGTTGTACAGTTTTCCCCATAATAGCCCGTCCTCGTGCAGTCACATTCATACCG 9903533 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || ||||||||||| |||| ||||| || ||| | || ||||||||||| Sbjct 9903532 ATCAAATCCTGTTGTCATGCATACACCTCTGTTCTGACATGGGAGGGAGCAGCAAGGGTT 9903473 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 9903472 GGCTGGAAT 9903464 >seq6492 Length=10956400 Score = 107 bits (118), Expect = 3e-18 Identities = 203/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | ||||||| |||||| ||| || | ||| || | || ||| | Sbjct 9255195 GGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGGGATGCTG 9255136 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || ||||| || || || | || || ||||| ||||| ||||||||| | |||| Sbjct 9255135 TCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCTGGGG 9255076 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| | | || || |||| ||||| ||||| || | ||| | |||| Sbjct 9255075 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCCACCATGC 9255016 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || |||||| | ||| | ||||| || | | || || | || | || | Sbjct 9255015 TTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAATCCTGGATAAAACTCCA 9254956 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| |||| ||| ||||| || | |||| ||| || || | |||| ||| ||| || Sbjct 9254955 GAGCGTCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTGTCCTCCTCTCCTGCA 9254897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723515631065000