Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq5241 136 6e-27
seq6492 107 3e-18
>seq5241
Length=29963013
Score = 136 bits (150), Expect = 6e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795
|| || ||||| | |||||| ||| |||| || || || || ||||| | || || |||
Sbjct 9906335 GTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAGACGTCACAG 9906276
Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855
|| || |||||||||||||||||||| || || |||||||||| || || || || |||
Sbjct 9906275 ACTCTATTGTGTTCTCTCAGCCATATCGTTGCATACATCATTAGGCCTGGGACCAAGCCA 9906216
Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915
||||| || | ||| || | ||| |||||| || || || | || | || | |||
Sbjct 9906215 AACACCTCCTGCCCAACAGAAAACTGCAGATGCTCAGGAACATGAGGAGGGTAGATCATC 9906156
Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968
| | || || || || || || || ||||||||||| || ||||| | |||
Sbjct 9906155 TCTGCTTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATCTG 9906103
Score = 120 bits (132), Expect = 4e-22
Identities = 204/296 (69%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| || ||||||||| || ||||| ||| | || || |
Sbjct 9908363 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 9908304
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || | || || || || || | || || || ||||| || ||||||||| | ||||
Sbjct 9908303 TATTGATTATTTCAAACCCCACTTTTCCACCAAAAGTGCTTGGCTTCCAGTACTCAGGGG 9908244
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||| || || |||| || ||||||| ||| ||||| || || | || | ||
Sbjct 9908243 AGCATATTGTATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCGCCAATTTCTACCATTG 9908184
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| ||||| ||||||||||| || | || ||||| || | | ||| | || ||||| |
Sbjct 9908183 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTACAAGAAGGCCTGGATACAGTTCCA 9908124
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||| || | ||| ||||| || |||| | || ||||| || || || || |||
Sbjct 9908123 TAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCT 9908068
Score = 89.7 bits (98), Expect = 7e-13
Identities = 160/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552
||||| |||||||| | ||| || | | | |||| | || ||| |||||
Sbjct 9907555 ATGGAGTTGTTGTAGAGGAACTGCTGGAATGTGTACTCCTGGTTATGTATCTGAAAAGTG 9907496
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
||||||| || | |||||| |||| || |||||||| || || || ||||||||||||
Sbjct 9907495 TCAGGCAGAAGGGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCGATTCGGTTCTGG 9907436
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
|| ||||| | ||| |||||| | ||| |||||||| | | | ||| ||||| |
Sbjct 9907435 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGGTCAAACTTCAATTTGAAATGGTAGC 9907378
Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722
| || | ||||| ||||| | | || | || || || ||||| || ||
Sbjct 9907377 CACTTAAGTGCTGCACATAATCTTCAATAACTATCTTGATCGTTTCTCCTGT 9907326
Score = 84.2 bits (92), Expect = 3e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || | ||||| ||||| | ||||||| ||| || || || ||| ||
Sbjct 9903592 CTTACGTGTTGTACAGTTTTCCCCATAATAGCCCGTCCTCGTGCAGTCACATTCATACCG 9903533
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
|||||| || ||||||||||| |||| ||||| || ||| | || |||||||||||
Sbjct 9903532 ATCAAATCCTGTTGTCATGCATACACCTCTGTTCTGACATGGGAGGGAGCAGCAAGGGTT 9903473
Query 10960 GGCTGCAAT 10968
||||| |||
Sbjct 9903472 GGCTGGAAT 9903464
>seq6492
Length=10956400
Score = 107 bits (118), Expect = 3e-18
Identities = 203/299 (68%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
||||||| | ||||||| |||||| ||| || | ||| || | || ||| |
Sbjct 9255195 GGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGGGATGCTG 9255136
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || ||||| || || || | || || ||||| ||||| ||||||||| | ||||
Sbjct 9255135 TCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCTGGGG 9255076
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| |||| | | || || |||| ||||| ||||| || | ||| | ||||
Sbjct 9255075 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCCACCATGC 9255016
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| || || |||||| | ||| | ||||| || | | || || | || | || |
Sbjct 9255015 TTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAATCCTGGATAAAACTCCA 9254956
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
||| |||| ||| ||||| || | |||| ||| || || | |||| ||| ||| ||
Sbjct 9254955 GAGCGTCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTGTCCTCCTCTCCTGCA 9254897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723515631065000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |