Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 152 6e-32
seq6642 149 7e-31
seq7311 82.4 9e-11
>seq6387
Length=12762846
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| || | |||| ||||||||||| || |||||| ||||| |||||||||||
Sbjct 4540410 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4540351
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||||||| | || || ||||||||||| || || |||| | |||||| |||| ||
Sbjct 4540350 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 4540291
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || |||||||||| |||||| ||| | || | | ||||| || | || ||
Sbjct 4540290 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACC 4540231
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| |||||||| ||||| |||| || || |||||||| |||||
Sbjct 4540230 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184
Score = 150 bits (166), Expect = 2e-31
Identities = 173/233 (74%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || || | |||| || ||||| | || |||||| ||||| ||||||||||
Sbjct 4540184 TGCCACCCCTGAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 4540125
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || |||||| |||| || ||||||||||| ||||| |||| | |||||| |||| |
Sbjct 4540124 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGG 4540065
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || |||||||||| |||||| ||||| || | | || || || | |||||
Sbjct 4540064 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCA 4540005
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
| |||| |||||||| ||||| || || || || || ||||| ||||| |||
Sbjct 4540004 CCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTTG 4539952
Score = 140 bits (154), Expect = 4e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| |||| || |||||| ||||| |||||||| || || ||||| |
Sbjct 4540626 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 4540567
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||||||||| || || |||| | ||| || |||| || | || |||||||
Sbjct 4540566 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTG 4540507
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||| | || | | |||||||| | |||||| |||| ||||||
Sbjct 4540506 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATG 4540447
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||| |||| || || |||||||| |||||
Sbjct 4540446 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412
>seq6642
Length=9979828
Score = 149 bits (164), Expect = 7e-31
Identities = 172/232 (74%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| || | |||| ||||||||||| || |||||| ||||| |||||||| |
Sbjct 6586177 TGCCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 6586118
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || |||||| |||| || ||||||||||| || || ||||| | |||||| |||| |
Sbjct 6586117 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAG 6586058
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || |||||||| |||||| ||| | || | | ||||| || | || |
Sbjct 6586057 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 6585998
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
| || | |||||||| ||||| ||||| || || |||||||| ||||| ||
Sbjct 6585997 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 6585946
Score = 134 bits (148), Expect = 2e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| || | ||||| ||||||||||| || ||| || ||||| |||||||| |
Sbjct 6586633 TGCCTCCCCTCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 6586574
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || |||||| |||| || ||||||||||| || || ||||| | |||||| |||| |
Sbjct 6586573 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAG 6586514
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || || ||||| |||||| ||| | | | | ||||| || | || |
Sbjct 6586513 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAA 6586454
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | |||||||| ||||| |||| ||||| || ||||| |||||
Sbjct 6586453 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| | |||| ||||||||||| || |||||| ||||| |||||||| ||
Sbjct 6586403 CCACCTCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586344
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| |||||| | || || |||||||| || || || ||||| | |||||| || | ||
Sbjct 6586343 AGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 6586284
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || || || ||| |||||| ||| | || | | ||||| || | ||| ||
Sbjct 6586283 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACC 6586224
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | |||||||| ||||| ||||| || || |||||||| |||||
Sbjct 6586223 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| || || | |||| ||||||||||| || |||||| ||||| |||||||| ||
Sbjct 6586860 GCCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 6586801
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485
|| |||||| |||| || ||||||||||| || || |||| | |||||| || | ||
Sbjct 6586800 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGG 6586741
Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| || || |||||| |||||| ||| | || | | ||||| || | || ||
Sbjct 6586740 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 6586681
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | |||||||| ||||| ||||| || || || ||||| |||||
Sbjct 6586680 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
>seq7311
Length=4974273
Score = 82.4 bits (90), Expect = 9e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 46493 TCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACC 46552
||||||||| |||||| ||| | || | | ||||| | | ||||| ||||
Sbjct 3901210 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCCAAG 3901269
Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 3901270 GTGATGGTTTTGCCCGTCAGCGTCTTCACAAAGATCTGCATTTTG 3901314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565072537857000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |