Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4328 197 5e-45 seq6492 87.8 7e-12 >seq4328 Length=59825302 Score = 197 bits (218), Expect = 5e-45 Identities = 292/410 (71%), Gaps = 9/410 (2%) Strand=Plus/Plus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252 ||||| ||||||| || || | |||| |||| ||||| ||||||||||||||| Sbjct 15970259 AAGCCACATATTCAGGTCGATGTTGGTGGTGGACAAACAAAAACATTTGCTCCTGAAGAA 15970318 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 ||||| | ||||| || || || ||||||||||| ||||| ||| | || | Sbjct 15970319 ATTTCTGCCATGGTCCTGACAAAGATGAAAGAAACTGCAGAGGCTTATCTGGGCAAGAAA 15970378 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || ||||||| || || || ||||||||||| || || || || || Sbjct 15970379 GTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCCACA 15970438 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || |||||||| || || || | || ||||||||||| || || || Sbjct 15970439 AAAGATGCTGGTACCATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGCCAACTGCT 15970498 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||||| | ||||| ||| | ||| ||| ||| | | ||||| || || | ||| Sbjct 15970499 GCTGCAATTGCATACGGA-TTGGA----CAAGAGAGA-GGGTGAAAAGAACATCCTTGTA 15970552 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 ||||| | ||||| |||||| |||| || | || ||||||| | || || ||| Sbjct 15970553 TTTGACCTGGGTGGTGGAACTTTTGATGTCTCCCTCCTGACAATTGACAACGGAGTCTTT 15970612 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 ||||| ||| || |||||||| || || || || || ||||| |||| Sbjct 15970613 GAAGTTGTGGCTACAAATGGTGACACACACCTGGGTGGAGAAGACTTTGA 15970662 Score = 118 bits (130), Expect = 4e-21 Identities = 394/602 (65%), Gaps = 16/602 (3%) Strand=Plus/Minus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCT 451957 || ||||||||||| || || || || || |||||||| || || | || || | Sbjct 52953760 GAGATTGTGCTTGTGGGGGGCTCCACTCGTATTCCTAAGATCCAGAAGTTGCTGCAAGAT 52953701 Query 451958 TATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGT 452017 | || || ||| | || |||||| | ||||| |||||||||||||| |||||| Sbjct 52953700 TTCTTCAATGGCAAAGAGCTGAACAAGAGCATCAATCCAGATGAAGCTGTTGCTTATGGT 52953641 Query 452018 GCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATATT 452074 || || || ||||||||||| || | || ||| | |||||| | |||| | Sbjct 52953640 GCCGCTGTGCAAGCAGCTATCCTCATGGG---AGACAAGTCTGAAAATGTGCAAGATCTG 52953584 Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 || | | ||||| || || || || || || | || |||||||||||| |||||||| Sbjct 52953583 CTCCTGTTGGATGTCACCCCCCTGTCCCTGGGCATCGAGACAGCTGGTGGAGTGATGACT 52953524 Query 452135 AATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCA 452194 | | || || || || | ||||| ||| | | || || || | || | Sbjct 52953523 GCTCTCATCAAGCGTAACACCACCATTCCCACCAAACAAACACAGACCTTCA--CCACCT 52953466 Query 452195 AGT--GATAACCA-ACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACA 452251 | | || ||||| | || |||| | || || | ||||||||||||||| ||||| Sbjct 52953465 ACTCAGACAACCAGAGCA-GTGTCCTCGTCCAGGTATATGAAGGAGAACGTGCTATGACT 52953407 Query 452252 CGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGA 452311 || || || || || | ||| || || ||| || || || | ||| Sbjct 52953406 AAGGACAACAACTTGCTGGGCAAGTTTGACCTAACAGGCATCCCCCCAGCACCCCGTGGA 52953347 Query 452312 ACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCA 452371 |||||| || || | || | ||| | ||||| |||||||| || || || ||||| Sbjct 52953346 GTTCCTCAGATCGAGGTCACTTTTGACATAGATGCTAATGGTATCCTGAACGTCAGTGCT 52953287 Query 452372 GTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCG-TT 452429 || || || | || || |||| || || || || || ||||| || || | Sbjct 52953286 GTGGACAAGAGTACAGG-GAAGGAGAACAAGATAACCATCACCAATGACAAGGGTCGCCT 52953228 Query 452430 TATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATG 452489 || | ||||| |||||||| |||||| | |||||||| |||| ||| | || |||| Sbjct 52953227 TAGC-AAAGATGATATTGACCGTATGGTACAAGAAGCAGAGAAATACAAAGCAGAGGATG 52953169 Query 452490 AA 452491 || Sbjct 52953168 AA 52953167 >seq6492 Length=10956400 Score = 87.8 bits (96), Expect = 7e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || ||||||| || || || ||||||||||| || || || || || Sbjct 10079651 GTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCCACA 10079592 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| || ||||||||| || || || | || ||||||||||| || Sbjct 10079591 AAAGATGCTGGTACTATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGCC 10079539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975124156385300