Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq4328 197 5e-45
seq6492 87.8 7e-12
>seq4328
Length=59825302
Score = 197 bits (218), Expect = 5e-45
Identities = 292/410 (71%), Gaps = 9/410 (2%)
Strand=Plus/Plus
Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGAA 451252
||||| ||||||| || || | |||| |||| ||||| |||||||||||||||
Sbjct 15970259 AAGCCACATATTCAGGTCGATGTTGGTGGTGGACAAACAAAAACATTTGCTCCTGAAGAA 15970318
Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312
||||| | ||||| || || || ||||||||||| ||||| ||| | || |
Sbjct 15970319 ATTTCTGCCATGGTCCTGACAAAGATGAAAGAAACTGCAGAGGCTTATCTGGGCAAGAAA 15970378
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| |||| || ||||||| || || || ||||||||||| || || || || ||
Sbjct 15970379 GTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCCACA 15970438
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
|||||||| || |||||||| || || || | || ||||||||||| || || ||
Sbjct 15970439 AAAGATGCTGGTACCATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGCCAACTGCT 15970498
Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492
||||| | ||||| ||| | ||| ||| ||| | | ||||| || || | |||
Sbjct 15970499 GCTGCAATTGCATACGGA-TTGGA----CAAGAGAGA-GGGTGAAAAGAACATCCTTGTA 15970552
Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552
||||| | ||||| |||||| |||| || | || ||||||| | || || |||
Sbjct 15970553 TTTGACCTGGGTGGTGGAACTTTTGATGTCTCCCTCCTGACAATTGACAACGGAGTCTTT 15970612
Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602
||||| ||| || |||||||| || || || || || ||||| ||||
Sbjct 15970613 GAAGTTGTGGCTACAAATGGTGACACACACCTGGGTGGAGAAGACTTTGA 15970662
Score = 118 bits (130), Expect = 4e-21
Identities = 394/602 (65%), Gaps = 16/602 (3%)
Strand=Plus/Minus
Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCT 451957
|| ||||||||||| || || || || || |||||||| || || | || || |
Sbjct 52953760 GAGATTGTGCTTGTGGGGGGCTCCACTCGTATTCCTAAGATCCAGAAGTTGCTGCAAGAT 52953701
Query 451958 TATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGT 452017
| || || ||| | || |||||| | ||||| |||||||||||||| ||||||
Sbjct 52953700 TTCTTCAATGGCAAAGAGCTGAACAAGAGCATCAATCCAGATGAAGCTGTTGCTTATGGT 52953641
Query 452018 GCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATATT 452074
|| || || ||||||||||| || | || ||| | |||||| | |||| |
Sbjct 52953640 GCCGCTGTGCAAGCAGCTATCCTCATGGG---AGACAAGTCTGAAAATGTGCAAGATCTG 52953584
Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134
|| | | ||||| || || || || || || | || |||||||||||| ||||||||
Sbjct 52953583 CTCCTGTTGGATGTCACCCCCCTGTCCCTGGGCATCGAGACAGCTGGTGGAGTGATGACT 52953524
Query 452135 AATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCA 452194
| | || || || || | ||||| ||| | | || || || | || |
Sbjct 52953523 GCTCTCATCAAGCGTAACACCACCATTCCCACCAAACAAACACAGACCTTCA--CCACCT 52953466
Query 452195 AGT--GATAACCA-ACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACA 452251
| | || ||||| | || |||| | || || | ||||||||||||||| |||||
Sbjct 52953465 ACTCAGACAACCAGAGCA-GTGTCCTCGTCCAGGTATATGAAGGAGAACGTGCTATGACT 52953407
Query 452252 CGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGA 452311
|| || || || || | ||| || || ||| || || || | |||
Sbjct 52953406 AAGGACAACAACTTGCTGGGCAAGTTTGACCTAACAGGCATCCCCCCAGCACCCCGTGGA 52953347
Query 452312 ACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCA 452371
|||||| || || | || | ||| | ||||| |||||||| || || || |||||
Sbjct 52953346 GTTCCTCAGATCGAGGTCACTTTTGACATAGATGCTAATGGTATCCTGAACGTCAGTGCT 52953287
Query 452372 GTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCG-TT 452429
|| || || | || || |||| || || || || || ||||| || || |
Sbjct 52953286 GTGGACAAGAGTACAGG-GAAGGAGAACAAGATAACCATCACCAATGACAAGGGTCGCCT 52953228
Query 452430 TATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATG 452489
|| | ||||| |||||||| |||||| | |||||||| |||| ||| | || ||||
Sbjct 52953227 TAGC-AAAGATGATATTGACCGTATGGTACAAGAAGCAGAGAAATACAAAGCAGAGGATG 52953169
Query 452490 AA 452491
||
Sbjct 52953168 AA 52953167
>seq6492
Length=10956400
Score = 87.8 bits (96), Expect = 7e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| |||| || ||||||| || || || ||||||||||| || || || || ||
Sbjct 10079651 GTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCCACA 10079592
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||| || ||||||||| || || || | || ||||||||||| ||
Sbjct 10079591 AAAGATGCTGGTACTATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGCC 10079539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975124156385300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |