Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4328 181 8e-40 seq7078 125 5e-23 seq3710 105 5e-17 >seq4328 Length=59825302 Score = 181 bits (200), Expect = 8e-40 Identities = 932/1470 (63%), Gaps = 26/1470 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | || || || |||||||| ||||| | ||||| ||||| || || ||||| || Sbjct 52953288 GCACTGACGTTCAGGATACCATTAGCATCTATGTCAAAAGTGACCTCGATCTGAGGAACT 52953347 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || ||||| ||| | | ||| | ||||| || || || ||| Sbjct 52953348 CCACGGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTA 52953407 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436 || | ||||| || || | | |||| || | ||| | | || || ||||| | Sbjct 52953408 GTCATAGCACGTTCTCCTTCATATACCTGGACGAGGACACTGC--TCTGGTTGTCTGAGT 52953465 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 52953466 AGGTGGTGAAGG-TCTGTGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 52953524 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| || | || || || || || |||||||| | |||| Sbjct 52953525 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 52953584 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || ||| | |||||| | | || | || ||||||||||| | ||| |||||| Sbjct 52953585 AGATCTTGCACATTTTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCGGCACCA 52953644 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 517674 || |||||||||||||| ||||| | | | || || | ||| |||||||| |||| | Sbjct 52953645 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAGAAATCT 52953704 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || | || || | | |||||||||||||| || || || || | ||||| || || Sbjct 52953705 TGCAGCAACTTCT-GGATCTTAGGAATACGAGTGGAGCCCCCCACAAGCACAATCTCCTG 52953763 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | ||| ||||| || || | ||| | | || || || || || || | Sbjct 52953764 GATCTGGCCCTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGGGTACC 52953823 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 517852 | || | || | | ||||| || || || | ||| || || | || || Sbjct 52953824 ACGGAAAAGATCAGCATTGAGTTCCTCAAAGCGGGCACGAGT--GATGGAGGTGTAGAAG 52953881 Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 ||||| || || || | || |||| ||||| | | ||| || ||||| || | | Sbjct 52953882 TCAATGCCCTCAAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 52953941 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 || || || | ||||| ||||| | || | | | || | ||| |||| | | Sbjct 52953942 CGCTTCGCCCTCTCACAAGCTGTACGCAGACGCCTCACTGC--TCGCTTATTGCCAGCAA 52953999 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 518028 || || | || | |||||| ||||| ||| | ||| |||| | || || || Sbjct 52954000 TGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAA--ATGGTTTACCATTCGGTTGTC 52954057 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||| || || || |||| | || | |||| || | | | || | || | ||||| Sbjct 52954058 AAAGTCCTCCCCACCCAGGTGGGTGTCACCTGCTGTGGATTTCACCTCAAAGATGCCATC 52954117 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 |||| | | | | |||||| || || || |||| ||||| || || ||||| Sbjct 52954118 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 52954177 Query 518149 CATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 | | ||| | || || ||||| | ||||| |||| |||||| || || || Sbjct 52954178 CTTCTCTCCAGCCCGGGTACCTTTCTTATCCAAGCCATAGGCAATAGCAGCTGCTGTGGG 52954237 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||||| ||||| | || || ||||| |||| || | || |||||||| ||||| || Sbjct 52954238 CTCATTGATAATACGCATCACGTTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 52954297 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 | || || ||||| || || || || || || ||||| |||| ||| | ||| || Sbjct 52954298 GCGCTGGGAGTCGTTGAAGTAAGCGGGCACTGTGATAACAGCATTCTGTACCTTTTTTCC 52954357 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 | ||| || || | | ||||| || | | | ||| || || | ||||| Sbjct 52954358 CAGATAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATAGAGCTGATCTCCTCTGG 52954417 Query 518383 GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 518442 | | | ||| ||| | || || | | | || || ||| | || Sbjct 52954418 GAAGAAGGTCTTCATCTCACCCTTGTACTCCACCTGCACCTTGGGCTTGCCACCCTCGTT 52954477 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502 | || || ||||||| ||||| || || || || | |||||| | | | | Sbjct 52954478 CACCACACGGAAGGGCCAGTGCTTCATGTCCGACTGCACTGTGGGGTCATCATACTTGCG 52954537 Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 || || | || || |||||||| || || ||||| || || ||||| |||| | || Sbjct 52954538 GCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCCACTTGGTTCTT 52954597 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||| || || || | ||||| || || || | ||||| || || ||||| Sbjct 52954598 GGCAGCATCCCCGATGAGGCGCTCTGTATCGGTGAAGGCCACATAGCTGGGTGTGGTGCG 52954657 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || || || || || ||||| || || ||||| |||| || | ||||| || ||| Sbjct 52954658 GTTCCCCTGGTCGTTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAAGA 52954717 Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | | || || || | ||| || || || || Sbjct 52954718 ATACGTGGTGCCCAGATCGATGCCGATGGC 52954747 Score = 136 bits (150), Expect = 3e-26 Identities = 523/810 (65%), Gaps = 35/810 (4%) Strand=Plus/Minus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 |||| | | || |||| ||| |||||||| || ||||| ||||| ||||||| | Sbjct 15971100 AGAACACCAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGA 15971041 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 517708 | | ||| |||||||| || | | || ||||||| || || || || |||| Sbjct 15971040 GAAGGCTCTTTCCCATTGAAGAACTCTTTAACAAGTTGTTGTATTTTGGGGATGCGAGTA 15970981 Query 517709 GATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAA 517768 || || ||||| | ||||| |||| | | || || | || | || || | | Sbjct 15970980 GAACCACCAACAAGAACAATCTCATCAATATCAGACTTCTTTAGGTCAGAGTCTTCCAGA 15970921 Query 517769 ACTTTTTCAACGGG-TTCA----AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGA 517823 ||||| | ||| || |||| ||| | | |||| || | |||||||| | Sbjct 15970920 ACTTTCTGAACAGGCTTCATCGTAGAACGG-----AACAGATCCATATTCAGTTCTTCAA 15970866 Query 517824 ATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAA 517883 |||| || | |||||| || || |||| |||||| || || || || | ||||| Sbjct 15970865 ATTTGGCACGAGTAAGCGTCTCAGAGAAATCCTCTCCTTCAAAAAAGGATTCTATTTCAA 15970806 Query 517884 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC-ACATGCTGTCCTTAGT 517942 | ||| ||| | || || || || || || || || || | | ||| ||||| Sbjct 15970805 TTCTAGCTTGGTGCTGGGATGACAGGGCCCGCTTCGCTTTCTCTACTTCCCGTC-TTAGT 15970747 Query 517943 CTTCGTAAGGCTTTTGCTGAT-TGATTC---AAATCTGTTTTATATTTTCT-CTTGAA-A 517996 | ||| ||| ||| | | ||| | |||| ||| | |||||| |||| | | Sbjct 15970746 TTCTGTACAGCT----CTGTTATCCTTCCTGACATCT-TTTCCTGTTTTCTTCTTGTAGA 15970692 Query 517997 TCTTCAACA----CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGT 518052 || | | | |||| || ||| | ||||| ||||| || |||| | || Sbjct 15970691 GTTTGATGAAGTGCTCCAT-----AACACGCTGGTCAAAGTCTTCTCCACCCAGGTGTGT 15970637 Query 518053 ATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATC 518112 | || ||||| |||| || | ||| | |||| | || || | ||||| Sbjct 15970636 GTCACCATTTGTAGCCACAACTTCAAAGACTCCGTTGTCAATTGTCAGGAGGGAGACATC 15970577 Query 518113 ATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATC 518172 | ||||||||||||| ||||| | ||| | ||| |||| ||| | || || Sbjct 15970576 AAAAGTTCCACCACCCAGGTCAAATACAAGGATGTTCTTTTCACCCTCTC---TCTTGTC 15970520 Query 518173 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 518232 | || || |||| |||||||||||||| ||||||||||| | || || || | || Sbjct 15970519 CAATCCGTATGCAATTGCAGCAGCAGTTGGCTCATTAATAATGCGCATCACGTTCAACCC 15970460 Query 518233 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 518292 |||||| | || |||||||| ||||| || | || | ||| || || || || || || Sbjct 15970459 AGCAATGGTACCAGCATCTTTTGTGGCCTGACGCTGAGCATCATTGAAGTAGGCTGGCAC 15970400 Query 518293 AGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 ||||| ||| |||| ||| |||| || || | |||||| ||| |||| |||||| || Sbjct 15970399 AGTAACAACAGCATGAGTAACTTTCTTGCCCAGATAAGCCTCTGCAGTTTCTTTCATCTT 15970340 Query 518353 ACTTAAAATCATTGATGAAATTTGTTCTGG 518382 | | | ||| | ||||||| ||| || Sbjct 15970339 TGTCAGGACCATGGCAGAAATTTCTTCAGG 15970310 >seq7078 Length=6280547 Score = 125 bits (138), Expect = 5e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| ||||| || || | ||||||||| ||||| ||||| ||||||| || ||| Sbjct 3075337 TTCTTATCCAGACCGTAGGCTATAGCAGCAGCTGTTGGCTCATTGATAATTCGCAGTACA 3075278 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || || ||||| |||| |||||||| ||||| |||| || || ||||||||||| Sbjct 3075277 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTGGCCTGTCGCTGGGAGTCGTTAAAATAG 3075218 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || |||| |||||| Sbjct 3075217 GCTGGTACAGTGACTACAGCATTAGTTAC 3075189 >seq3710 Length=91282656 Score = 105 bits (116), Expect = 5e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 34954074 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 34954133 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || |||||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 34954134 TCATTATGGTGCCCCCAAGGAAATGGAATCCTATTACCAAGAAATTGGAAGAGCTGGTCG 34954193 Query 367113 TGATGG 367118 |||||| Sbjct 34954194 TGATGG 34954199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779657493173350