Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq4328 181 8e-40
seq7078 125 5e-23
seq3710 105 5e-17
>seq4328
Length=59825302
Score = 181 bits (200), Expect = 8e-40
Identities = 932/1470 (63%), Gaps = 26/1470 (2%)
Strand=Plus/Plus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
||| | || || || |||||||| ||||| | ||||| ||||| || || ||||| ||
Sbjct 52953288 GCACTGACGTTCAGGATACCATTAGCATCTATGTCAAAAGTGACCTCGATCTGAGGAACT 52953347
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378
|| | | || || ||||| ||| | | ||| | ||||| || || || |||
Sbjct 52953348 CCACGGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTA 52953407
Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 517436
|| | ||||| || || | | |||| || | ||| | | || || ||||| |
Sbjct 52953408 GTCATAGCACGTTCTCCTTCATATACCTGGACGAGGACACTGC--TCTGGTTGTCTGAGT 52953465
Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495
| || || || |||| ||| ||| ||||| || ||||| | | || | |
Sbjct 52953466 AGGTGGTGAAGG-TCTGTGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 52953524
Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555
||||| | ||||| ||||| || | || || || || || |||||||| | ||||
Sbjct 52953525 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 52953584
Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615
| || ||| | |||||| | | || | || ||||||||||| | ||| ||||||
Sbjct 52953585 AGATCTTGCACATTTTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCGGCACCA 52953644
Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 517674
|| |||||||||||||| ||||| | | | || || | ||| |||||||| |||| |
Sbjct 52953645 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAGAAATCT 52953704
Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734
|| | || || | | |||||||||||||| || || || || | ||||| || ||
Sbjct 52953705 TGCAGCAACTTCT-GGATCTTAGGAATACGAGTGGAGCCCCCCACAAGCACAATCTCCTG 52953763
Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794
| ||| ||||| || || | ||| | | || || || || || || |
Sbjct 52953764 GATCTGGCCCTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGGGTACC 52953823
Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 517852
| || | || | | ||||| || || || | ||| || || | || ||
Sbjct 52953824 ACGGAAAAGATCAGCATTGAGTTCCTCAAAGCGGGCACGAGT--GATGGAGGTGTAGAAG 52953881
Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912
||||| || || || | || |||| ||||| | | ||| || ||||| || | |
Sbjct 52953882 TCAATGCCCTCAAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 52953941
Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970
|| || || | ||||| ||||| | || | | | || | ||| |||| | |
Sbjct 52953942 CGCTTCGCCCTCTCACAAGCTGTACGCAGACGCCTCACTGC--TCGCTTATTGCCAGCAA 52953999
Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 518028
|| || | || | |||||| ||||| ||| | ||| |||| | || || ||
Sbjct 52954000 TGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAA--ATGGTTTACCATTCGGTTGTC 52954057
Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088
||| || || || |||| | || | |||| || | | | || | || | |||||
Sbjct 52954058 AAAGTCCTCCCCACCCAGGTGGGTGTCACCTGCTGTGGATTTCACCTCAAAGATGCCATC 52954117
Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148
|||| | | | | |||||| || || || |||| ||||| || || |||||
Sbjct 52954118 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 52954177
Query 518149 CATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202
| | ||| | || || ||||| | ||||| |||| |||||| || || ||
Sbjct 52954178 CTTCTCTCCAGCCCGGGTACCTTTCTTATCCAAGCCATAGGCAATAGCAGCTGCTGTGGG 52954237
Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262
||||| ||||| | || || ||||| |||| || | || |||||||| ||||| ||
Sbjct 52954238 CTCATTGATAATACGCATCACGTTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 52954297
Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322
| || || ||||| || || || || || || ||||| |||| ||| | ||| ||
Sbjct 52954298 GCGCTGGGAGTCGTTGAAGTAAGCGGGCACTGTGATAACAGCATTCTGTACCTTTTTTCC 52954357
Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382
| ||| || || | | ||||| || | | | ||| || || | |||||
Sbjct 52954358 CAGATAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATAGAGCTGATCTCCTCTGG 52954417
Query 518383 GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 518442
| | | ||| ||| | || || | | | || || ||| | ||
Sbjct 52954418 GAAGAAGGTCTTCATCTCACCCTTGTACTCCACCTGCACCTTGGGCTTGCCACCCTCGTT 52954477
Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502
| || || ||||||| ||||| || || || || | |||||| | | | |
Sbjct 52954478 CACCACACGGAAGGGCCAGTGCTTCATGTCCGACTGCACTGTGGGGTCATCATACTTGCG 52954537
Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562
|| || | || || |||||||| || || ||||| || || ||||| |||| | ||
Sbjct 52954538 GCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCCACTTGGTTCTT 52954597
Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622
||| ||||| || || || | ||||| || || || | ||||| || || |||||
Sbjct 52954598 GGCAGCATCCCCGATGAGGCGCTCTGTATCGGTGAAGGCCACATAGCTGGGTGTGGTGCG 52954657
Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682
|| || || || || ||||| || || ||||| |||| || | ||||| || |||
Sbjct 52954658 GTTCCCCTGGTCGTTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAAGA 52954717
Query 518683 AAAAGTTGTTCCTAAATCAATACCAATAGC 518712
| | || || || | ||| || || || ||
Sbjct 52954718 ATACGTGGTGCCCAGATCGATGCCGATGGC 52954747
Score = 136 bits (150), Expect = 3e-26
Identities = 523/810 (65%), Gaps = 35/810 (4%)
Strand=Plus/Minus
Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648
|||| | | || |||| ||| |||||||| || ||||| ||||| ||||||| |
Sbjct 15971100 AGAACACCAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGA 15971041
Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 517708
| | ||| |||||||| || | | || ||||||| || || || || ||||
Sbjct 15971040 GAAGGCTCTTTCCCATTGAAGAACTCTTTAACAAGTTGTTGTATTTTGGGGATGCGAGTA 15970981
Query 517709 GATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAA 517768
|| || ||||| | ||||| |||| | | || || | || | || || | |
Sbjct 15970980 GAACCACCAACAAGAACAATCTCATCAATATCAGACTTCTTTAGGTCAGAGTCTTCCAGA 15970921
Query 517769 ACTTTTTCAACGGG-TTCA----AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGA 517823
||||| | ||| || |||| ||| | | |||| || | |||||||| |
Sbjct 15970920 ACTTTCTGAACAGGCTTCATCGTAGAACGG-----AACAGATCCATATTCAGTTCTTCAA 15970866
Query 517824 ATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAA 517883
|||| || | |||||| || || |||| |||||| || || || || | |||||
Sbjct 15970865 ATTTGGCACGAGTAAGCGTCTCAGAGAAATCCTCTCCTTCAAAAAAGGATTCTATTTCAA 15970806
Query 517884 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC-ACATGCTGTCCTTAGT 517942
| ||| ||| | || || || || || || || || || | | ||| |||||
Sbjct 15970805 TTCTAGCTTGGTGCTGGGATGACAGGGCCCGCTTCGCTTTCTCTACTTCCCGTC-TTAGT 15970747
Query 517943 CTTCGTAAGGCTTTTGCTGAT-TGATTC---AAATCTGTTTTATATTTTCT-CTTGAA-A 517996
| ||| ||| ||| | | ||| | |||| ||| | |||||| |||| | |
Sbjct 15970746 TTCTGTACAGCT----CTGTTATCCTTCCTGACATCT-TTTCCTGTTTTCTTCTTGTAGA 15970692
Query 517997 TCTTCAACA----CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGT 518052
|| | | | |||| || ||| | ||||| ||||| || |||| | ||
Sbjct 15970691 GTTTGATGAAGTGCTCCAT-----AACACGCTGGTCAAAGTCTTCTCCACCCAGGTGTGT 15970637
Query 518053 ATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATC 518112
| || ||||| |||| || | ||| | |||| | || || | |||||
Sbjct 15970636 GTCACCATTTGTAGCCACAACTTCAAAGACTCCGTTGTCAATTGTCAGGAGGGAGACATC 15970577
Query 518113 ATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATC 518172
| ||||||||||||| ||||| | ||| | ||| |||| ||| | || ||
Sbjct 15970576 AAAAGTTCCACCACCCAGGTCAAATACAAGGATGTTCTTTTCACCCTCTC---TCTTGTC 15970520
Query 518173 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 518232
| || || |||| |||||||||||||| ||||||||||| | || || || | ||
Sbjct 15970519 CAATCCGTATGCAATTGCAGCAGCAGTTGGCTCATTAATAATGCGCATCACGTTCAACCC 15970460
Query 518233 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 518292
|||||| | || |||||||| ||||| || | || | ||| || || || || || ||
Sbjct 15970459 AGCAATGGTACCAGCATCTTTTGTGGCCTGACGCTGAGCATCATTGAAGTAGGCTGGCAC 15970400
Query 518293 AGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352
||||| ||| |||| ||| |||| || || | |||||| ||| |||| |||||| ||
Sbjct 15970399 AGTAACAACAGCATGAGTAACTTTCTTGCCCAGATAAGCCTCTGCAGTTTCTTTCATCTT 15970340
Query 518353 ACTTAAAATCATTGATGAAATTTGTTCTGG 518382
| | | ||| | ||||||| ||| ||
Sbjct 15970339 TGTCAGGACCATGGCAGAAATTTCTTCAGG 15970310
>seq7078
Length=6280547
Score = 125 bits (138), Expect = 5e-23
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| ||||| ||||| || || | ||||||||| ||||| ||||| ||||||| || |||
Sbjct 3075337 TTCTTATCCAGACCGTAGGCTATAGCAGCAGCTGTTGGCTCATTGATAATTCGCAGTACA 3075278
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || || ||||| |||| |||||||| ||||| |||| || || |||||||||||
Sbjct 3075277 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTGGCCTGTCGCTGGGAGTCGTTAAAATAG 3075218
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313
|| || ||||| | || |||| ||||||
Sbjct 3075217 GCTGGTACAGTGACTACAGCATTAGTTAC 3075189
>seq3710
Length=91282656
Score = 105 bits (116), Expect = 5e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052
||| || || ||| | |||||||| ||||| || |||||| | ||| | | | |||||
Sbjct 34954074 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 34954133
Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112
||||||||| || |||||| | || ||| ||||| ||||||||||| ||||| |||||
Sbjct 34954134 TCATTATGGTGCCCCCAAGGAAATGGAATCCTATTACCAAGAAATTGGAAGAGCTGGTCG 34954193
Query 367113 TGATGG 367118
||||||
Sbjct 34954194 TGATGG 34954199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779657493173350
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