Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq4328 176 6e-39
seq7078 168 8e-37
>seq4328
Length=59825302
Score = 176 bits (194), Expect = 6e-39
Identities = 261/368 (71%), Gaps = 4/368 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || ||||| ||||||| |||||| || || || || |||||||||| ||
Sbjct 15970662 TCAAAGTCTTCTCCACCCAGGTGTGTGTCACCATTTGTAGCCACAACTTCAAAGACTCCG 15970603
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
||||| | | | || |||||||| || ||||||||||||||||| | || | |
Sbjct 15970602 TTGTCAATTGTCAGGAGGGAGACATCAAAAGTTCCACCACCCAGGTCAAATACAAGGATG 15970543
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
||| | || | ||| | ||| || | ||||| || || || || || ||||| |||
Sbjct 15970542 TTCTTTTCACCCTCTCT---CTTGTCCAATCCGTATGCAATTGCAGCAGCAGTTGGCTCA 15970486
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|||||||| || | ||||| |||||||| || | |||||||| || || || ||
Sbjct 15970485 TTAATAATGCGCATCACGTTCAACCCAGCAATGGTACCAGCATCTTTTGTGGCCTGACGC 15970426
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| | ||| || |||||||| || || || || || || | || |||||||| || |||
Sbjct 15970425 TGAGCATCATTGAAGTAGGCTGGCACAGTAACAACAGCATGAGTAACTTTCTTGCCCAGA 15970366
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| | || || | |||||||| || || || ||||| | ||||| ||||||| |||
Sbjct 15970365 TAAGCCTCTGCAGTTTCTTTCATCTTTGTCAGGACCATGGCAGAAATTTCTTCAGGAGCA 15970306
Query 7817 AACTGTTT 7824
|| |||||
Sbjct 15970305 AA-TGTTT 15970299
>seq7078
Length=6280547
Score = 168 bits (186), Expect = 8e-37
Identities = 365/543 (67%), Gaps = 6/543 (1%)
Strand=Plus/Minus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
|| || || || || || ||||| || || || | || |||| ||||| ||||| ||
Sbjct 3075996 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCGTTGAAG 3075937
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
| || | || || ||||| || ||||| || || || || || |||| || ||
Sbjct 3075936 AAGTCTTGCAGCAGTTTCTGAATCTTTGGGATGCGGGTAGACCCCCCAACCAGCACAATG 3075877
Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219
|||| | | || || || | ||| | || || || | || || ||||| ||||
Sbjct 3075876 TCATGGATCTGTGACTTGTCTAGCTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAGG 3075817
Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279
|||||||| ||| | ||| || || || || || | ||| || ||||| |||
Sbjct 3075816 GTGCCACGGAACAGGTCAGCATTCAGCTCTTCGAAGCGAGCTCTGGTGATCGATGTGTAG 3075757
Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339
|| |||| || || || | ||||| |||||||| | | ||||| | || || |
Sbjct 3075756 AAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCTTGTGTGCTTGATGACAGG 3075697
Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399
|| |||||||| || ||||| || || || | ||||||| || | | ||| |
Sbjct 3075696 GTACGCTTTGCACGTTCACATGCAGTACGAAGGCGACGAACTGCTCTCTTGTTCTCACTG 3075637
Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456
|| |||||||| || || || || || || || |||||| | || | | | |
Sbjct 3075636 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTTG--- 3075580
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| |||||||| |||||||| || || || || || || | ||| || |||||||| ||
Sbjct 3075579 TCAAAATCTTCTCCACCCAAATGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 3075520
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
||||||| | | | || |||||||| || ||||| || ||||||||||| || |||
Sbjct 3075519 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAAATAAGAACG 3075460
Query 7577 TTC 7579
|||
Sbjct 3075459 TTC 3075457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634946428219000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |