Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4328 176 6e-39 seq7078 168 8e-37 >seq4328 Length=59825302 Score = 176 bits (194), Expect = 6e-39 Identities = 261/368 (71%), Gaps = 4/368 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||| |||||| || || || || |||||||||| || Sbjct 15970662 TCAAAGTCTTCTCCACCCAGGTGTGTGTCACCATTTGTAGCCACAACTTCAAAGACTCCG 15970603 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | | || |||||||| || ||||||||||||||||| | || | | Sbjct 15970602 TTGTCAATTGTCAGGAGGGAGACATCAAAAGTTCCACCACCCAGGTCAAATACAAGGATG 15970543 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | ||| | ||| || | ||||| || || || || || ||||| ||| Sbjct 15970542 TTCTTTTCACCCTCTCT---CTTGTCCAATCCGTATGCAATTGCAGCAGCAGTTGGCTCA 15970486 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 |||||||| || | ||||| |||||||| || | |||||||| || || || || Sbjct 15970485 TTAATAATGCGCATCACGTTCAACCCAGCAATGGTACCAGCATCTTTTGTGGCCTGACGC 15970426 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||| || |||||||| || || || || || || | || |||||||| || ||| Sbjct 15970425 TGAGCATCATTGAAGTAGGCTGGCACAGTAACAACAGCATGAGTAACTTTCTTGCCCAGA 15970366 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || | |||||||| || || || ||||| | ||||| ||||||| ||| Sbjct 15970365 TAAGCCTCTGCAGTTTCTTTCATCTTTGTCAGGACCATGGCAGAAATTTCTTCAGGAGCA 15970306 Query 7817 AACTGTTT 7824 || ||||| Sbjct 15970305 AA-TGTTT 15970299 >seq7078 Length=6280547 Score = 168 bits (186), Expect = 8e-37 Identities = 365/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || |||| ||||| ||||| || Sbjct 3075996 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCGTTGAAG 3075937 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || | || || ||||| || ||||| || || || || || |||| || || Sbjct 3075936 AAGTCTTGCAGCAGTTTCTGAATCTTTGGGATGCGGGTAGACCCCCCAACCAGCACAATG 3075877 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | || || || | ||| | || || || | || || ||||| |||| Sbjct 3075876 TCATGGATCTGTGACTTGTCTAGCTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAGG 3075817 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | ||| || || || || || | ||| || ||||| ||| Sbjct 3075816 GTGCCACGGAACAGGTCAGCATTCAGCTCTTCGAAGCGAGCTCTGGTGATCGATGTGTAG 3075757 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | ||||| |||||||| | | ||||| | || || | Sbjct 3075756 AAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCTTGTGTGCTTGATGACAGG 3075697 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| || ||||| || || || | ||||||| || | | ||| | Sbjct 3075696 GTACGCTTTGCACGTTCACATGCAGTACGAAGGCGACGAACTGCTCTCTTGTTCTCACTG 3075637 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || || |||||| | || | | | | Sbjct 3075636 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCGGTTG--- 3075580 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || |||||||| |||||||| || || || || || || | ||| || |||||||| || Sbjct 3075579 TCAAAATCTTCTCCACCCAAATGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 3075520 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || ||||||||||| || ||| Sbjct 3075519 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAAATAAGAACG 3075460 Query 7577 TTC 7579 ||| Sbjct 3075459 TTC 3075457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634946428219000