Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 132 1e-25
seq6642 127 5e-24
>seq6387
Length=12762846
Score = 132 bits (146), Expect = 1e-25
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| | || || ||||| || |||||||| || || || ||||| || | || ||
Sbjct 4540632 CTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 4540573
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| |||||||| |||||||| || || ||||| || | ||||| || || ||||||||
Sbjct 4540572 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCC 4540513
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099
|| ||||| || || || ||| ||||||||||||||||| |||||| || |||
Sbjct 4540512 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGG 4540453
Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| | ||||| || ||||| || || || || | |||||
Sbjct 4540452 GTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412
Score = 131 bits (144), Expect = 4e-25
Identities = 157/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || |||||||| || || || ||||| |||| ||||| | |||||||||
Sbjct 4540392 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCC 4540333
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || || || || |||||||| || ||||| ||
Sbjct 4540332 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4540273
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| ||||||||||||||||| ||| || || || ||||| | |||
Sbjct 4540272 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCCAGGGTGATGGTC 4540216
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||||||| || || || || | |||||
Sbjct 4540215 TTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184
Score = 125 bits (138), Expect = 2e-23
Identities = 163/224 (73%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| | || ||||| || ||||||||||| || || || ||||| |||| || ||
Sbjct 4540176 CTGAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 4540117
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| ||| ||||| |||||||| || |||||||| || | || || || || ||||||||
Sbjct 4540116 CGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCC 4540057
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096
|| ||||| || || || |||||| ||||| ||||| || ||| |||||| ||
Sbjct 4540056 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATC---ACTGGGTTCCACCTCC 4540000
Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||| | ||||| || || | || || ||||| | |||||
Sbjct 4539999 AAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4539956
>seq6642
Length=9979828
Score = 127 bits (140), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || ||||||||||| || || ||||| || | || || | ||| |||||
Sbjct 6586613 ACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 6586554
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| | | || || || |||||||||||||||||||||||
Sbjct 6586553 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGG 6586494
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || || ||||| ||||| ||| || || || ||||| | |||
Sbjct 6586493 ATCTTGGCCTTCACATTTTCAATTGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 6586437
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || ||||| ||||| ||||| | |||||
Sbjct 6586436 TTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 123 bits (136), Expect = 6e-23
Identities = 163/225 (72%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || || || || || |||||||| || || || ||||| || | || ||
Sbjct 6586398 TCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 6586339
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| ||||||||||| || ||||| | | || || || |||||||||||
Sbjct 6586338 GCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCC 6586279
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
|||||| || || || || ||| || |||||||||||||| ||| ||| || ||
Sbjct 6586278 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCAACCTC 6586222
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| || |||| || || || || | |||||
Sbjct 6586221 GAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
Score = 122 bits (134), Expect = 2e-22
Identities = 162/224 (72%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| | || || || || || |||||||| || || || ||||| || | || ||
Sbjct 6586853 CTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 6586794
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| ||| ||||| |||||||| || || || || || | || || || ||||||||||||
Sbjct 6586793 CGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCT 6586734
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096
|||||||| || || || ||| || |||||||||||||| ||| || || ||
Sbjct 6586733 TCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCG 6586677
Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| || |||| || || ||||| | |||||
Sbjct 6586676 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
Score = 113 bits (124), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || |||||||| || || || ||||| || | || || | ||| |||||
Sbjct 6586157 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 6586098
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| | | || || || |||||||||||||| ||||||||
Sbjct 6586097 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGG 6586038
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| || || || ||||| | |||
Sbjct 6586037 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTC 6585981
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 6585980 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6585949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109147897405325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |