Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6642 102 5e-17 seq6387 98.7 6e-16 >seq6642 Length=9979828 Score = 102 bits (112), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||| || | ||| || ||||| ||||| ||||| || Sbjct 6586175 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 6586116 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || | | ||||| || | || Sbjct 6586115 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGA 6586056 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| || || || || || | |||| || ||||| Sbjct 6586055 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 6585998 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | |||| ||| ||||| || || || || |||||||||||||||||||| || Sbjct 6585997 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 6585946 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 6586823 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAA 6586764 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || || ||||| ||||| || || || Sbjct 6586763 ATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCAC--AT 6586706 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| |||| ||| ||||| || || || || ||||||| Sbjct 6586705 TCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 6586646 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 6586645 CGAAGATCTGCAT 6586633 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||| || | ||| |||||||| ||||| ||||| || Sbjct 6586631 CCTCCCCTCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 6586572 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || | | ||||| || | || Sbjct 6586571 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGA 6586512 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| || || | | || | |||| || |||||| Sbjct 6586511 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACC 6586452 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| ||||| || || || | || ||||| ||||||||||| Sbjct 6586451 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 6586367 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTACCAGCAAAG 6586308 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||| || | || | || || || || ||||| || || || Sbjct 6586307 ATCAACCTCTGCTGATCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--AT 6586250 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||||| |||| ||| ||||| || || || || ||||||| Sbjct 6586249 TCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 6586190 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 6586189 CAAAGATCTGCAT 6586177 >seq6387 Length=12762846 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||| || | ||| || ||||| ||||| ||||| || Sbjct 4540410 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4540351 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | ||||| || | || Sbjct 4540350 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 4540291 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || ||| | || | |||| || ||| || Sbjct 4540290 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACC 4540231 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || | |||||||||||||||||||| Sbjct 4540230 TCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || |||||||| || || || || Sbjct 4540146 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 4540087 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | ||||||||||| ||||| ||||| || Sbjct 4540086 ATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT 4540029 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || || || || | ||| ||||| || || ||||| ||||||| Sbjct 4540028 TCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCA 4539969 Query 34969 CAAAGATCTGCATATTCGT 34987 | ||||||||||| || || Sbjct 4539968 CGAAGATCTGCATGTTGGT 4539950 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||| | | || |||| ||| | ||| || ||||| ||||| ||||| Sbjct 4540641 TTACCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 4540582 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | ||| |||| |||||||| || || ||||| || || | || || || | Sbjct 4540581 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGG 4540522 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | ||||||||||| ||||| || ||| | || | || | || || Sbjct 4540521 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGTTCC 4540462 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || | |||||||||||||||||||| Sbjct 4540461 ACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4540412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324540721819800