Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1781 118 1e-21
seq2929 111 2e-19
>seq1781
Length=149560735
Score = 118 bits (130), Expect = 1e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030
|||||| | | |||| ||||| || || | |||||| || || || || ||||||||||
Sbjct 129690747 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 129690806
Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090
| || || || || | ||| ||||||| ||||||||| || |||||||| || ||||| |
Sbjct 129690807 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 129690866
Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCC 19118
|||| ||||| ||||| | ||| || ||
Sbjct 129690867 CTGCAGCAAAGGCAACCACTCTCTCACC 129690894
>seq2929
Length=111302122
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | ||||||||||| || | |||||||| | |||||||| |
Sbjct 96934804 CCTCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 96934745
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||| |
Sbjct 96934744 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 96934685
Query 19103 CAACTAGTCTTTCTCC 19118
| |||| | ||||||
Sbjct 96934684 CTACTACGCGTTCTCC 96934669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561943856199000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |