Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4328 122 7e-22 seq7078 116 3e-20 seq6642 96.9 3e-14 >seq4328 Length=59825302 Score = 122 bits (134), Expect = 7e-22 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 ||||| ||| | || ||| ||||||| | ||||| | | || |||||| |||| || Sbjct 15970299 AAACA-TTTGCTCCTGAAGAAATTTCTGCCATGGTCCTGACAAAGATGAAAGAAACTGCA 15970357 Query 550370 AGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 |||| | | || |||||| ||||| |||| || | ||||| ||||| || || || Sbjct 15970358 GAGGCTTATCTGGG-CAAGAAAGTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAA 15970416 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| | || ||||| || || ||||||||||| |||||||| | || || | || Sbjct 15970417 TGATGCTCAGCGTCAGGCCACAAAAGATGCTGGTACCATTGCTGGGTTGAACGTGATGCG 15970476 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| ||||| || |||||||||||| ||||||| ||| | || || Sbjct 15970477 CATTATTAATGAGCCAACTGCTGCTGCAATTGCATACGGATTGGACAA 15970524 Score = 114 bits (126), Expect = 1e-19 Identities = 330/506 (65%), Gaps = 4/506 (1%) Strand=Plus/Minus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||| ||||||| | | | || || ||||||||||| || || || || | Sbjct 52953790 GATGCCAAGCTTGATAAGGGCCAGATCCAGGAGATTGTGCTTGTGGGGGGCTCCACTCGT 52953731 Query 552147 ATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 |||||||| || | | || | ||| | | |||||||| ||| | | || | | Sbjct 52953730 ATTCCTAAGATCCAGAAGTTGCTGCAAGATTTC--TTCAATGGCAAAGAGCTGAACAAGA 52953673 Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 | | ||||||||||| |||||||| ||||||||||| | ||||||||||| || | Sbjct 52953672 GCATCAATCCAGATGAAGCTGTTGCTTATGGTGCCGCTGTGCAAGCAGCTATCCTCATGG 52953613 Query 552265 GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324 || | | |||||| | ||| || | | || | ||||| || || || || || | Sbjct 52953612 GAGACAAGTCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTCCCTGG 52953553 Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384 | | || |||| ||| || | |||||| ||| ||| | | || || || ||||| Sbjct 52953552 GCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCATTCCCA 52953493 Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444 ||| || | | || | || || ||||| || || | ||| | || Sbjct 52953492 CCAAACAAACACAGACCTTCACCACCTACTCAGACAACCAGAGCAGTGTCCTCGTCCAGG 52953433 Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504 | | |||||||||| | | ||||| || || || || || | ||| | || Sbjct 52953432 TATATGAAGGAGAACGTGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGACCTAA 52953373 Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATG 552564 ||| || || || || || |||||||| || || || || || ||||| || || |||| Sbjct 52953372 CAGGCATCCCCCCAGCACCCCGTGGAGTTCCTCAGATCGAGGTCACTTTTGACATAGATG 52953313 Query 552565 CCAATGGAATTTTGAATGTGACTGCT 552590 | ||||| || |||| || | |||| Sbjct 52953312 CTAATGGTATCCTGAACGTCAGTGCT 52953287 Score = 109 bits (120), Expect = 4e-18 Identities = 358/549 (65%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || ||||| ||| ||| || ||||| | || |||| ||| Sbjct 52954747 GCCATCGGCATCGATCTGGGCACCACGTATTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 52954688 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||| || || || ||| | || || || ||||| | ||||| Sbjct 52954687 GTGGAGATCATTGCCAACGACCAGGGGAACCGCACCACACCCAGCTATGTGGCCTTCACC 52954628 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCA 550169 || || || | | | || ||||| || || | |||| || || || || |||| Sbjct 52954627 GATACAGAGCGCCTCATCGGGGATGCTGCCAAGAACCAAGTGGCAATG--AACCCCACCA 52954570 Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 | || || |||||||| || ||| | || || | | | | |||| | || || ||| Sbjct 52954569 ACACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGT 52954510 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 | || |||||||| ||||| |||| | || || | ||| || || | | | || Sbjct 52954509 CGGACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGT-GCAG 52954451 Query 550290 CTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTA 550348 | |||| | | | || | || | ||||| | || |||||||| | Sbjct 52954450 GTGGAGTACAAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCTATGGTGCTC 52954391 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGTAAT 550407 | || ||||| | | || || | | | || || ||| ||| || ||| || || Sbjct 52954390 ACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGAAAA-AAGGTACAGAATGCTGTTAT 52954332 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || || || || || || ||||| || || || || || ||||||||||| || Sbjct 52954331 CACAGTGCCCGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 52954272 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| ||||| || | |||||||||||||| || || || ||||| |||| ||||| Sbjct 52954271 CACTGGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATTGCCTATGG 52954212 Query 550528 ACTTGATAA 550536 | ||||| Sbjct 52954211 CTTGGATAA 52954203 >seq7078 Length=6280547 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||||||||| |||||||| ||||| || || || || || ||||||| Sbjct 3075196 ATGCTGTAGTCACTGTACCAGCCTATTTTAACGACTCCCAGCGACAGGCCACAAAAGATG 3075255 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || ||||||||||| || || |||||||| Sbjct 3075256 CTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACAGCTGCTGCTA 3075315 Query 550518 TTGCATATGGACTTGATAA 550536 | || || || || ||||| Sbjct 3075316 TAGCCTACGGTCTGGATAA 3075334 Score = 102 bits (112), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | |||| | ||||| ||| | |||||||| ||| ||||||||||| Sbjct 3074227 ATGTCAAAGGGACCAGCTGTTGGTATCGATCTTGGAACCACCTATTCCTGTGTTGGTGTG 3074286 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | ||| |||| || || ||||| ||||||||||| || |||||||| || || ||| Sbjct 3074287 TTCCAACATGGGAAGGTGGAAATCATTGCCAATGACCAGGGTAACAGGACCACGCCAAGC 3074346 Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCA 550154 || || ||||||| || || || || |||| ||||| || || | |||| || Sbjct 3074347 TACGTCGCTTTCACAGATACAGAGAGGTTGATTGGCGATGCTGCCAAGAACCAAGTTGCA 3074406 Query 550155 CTGGTAATCCTACCAATAC 550173 || ||||| ||||| || Sbjct 3074407 ATG--AATCCCACCAACAC 3074423 Score = 89.7 bits (98), Expect = 4e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || |||||||| |||||| Sbjct 3076893 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTCGATATTGATGCC 3076952 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||||||| ||||| ||||| Sbjct 3076953 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3076984 >seq6642 Length=9979828 Score = 96.9 bits (106), Expect = 3e-14 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || || || ||||| ||||| ||| | ||| || ||||| |||| || Sbjct 6586854 CCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGG 6586797 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||| || || || || |||||||| || || ||||||||||||||||| Sbjct 6586796 GTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATG 6586737 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 |||||||| || || || || || || |||||| || ||| || | | ||| Sbjct 6586736 CCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCG 6586677 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || || || ||||| || ||||| Sbjct 6586676 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633 Score = 86.0 bits (94), Expect = 5e-11 Identities = 154/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || || || || || ||||| ||||| ||| | ||| || ||||| |||| || | Sbjct 6586397 CTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGGG 6586340 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || || || || ||||| || | || ||||||||||||||||| | Sbjct 6586339 TGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGC 6586280 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||||||||| || || || || || |||||| || ||| || | | |||| Sbjct 6586279 CTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGA 6586220 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || ||||| || || || || || || ||||| Sbjct 6586219 GGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028054536127750