Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq4328 122 7e-22
seq7078 116 3e-20
seq6642 96.9 3e-14
>seq4328
Length=59825302
Score = 122 bits (134), Expect = 7e-22
Identities = 166/228 (73%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369
||||| ||| | || ||| ||||||| | ||||| | | || |||||| |||| ||
Sbjct 15970299 AAACA-TTTGCTCCTGAAGAAATTTCTGCCATGGTCCTGACAAAGATGAAAGAAACTGCA 15970357
Query 550370 AGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428
|||| | | || |||||| ||||| |||| || | ||||| ||||| || || ||
Sbjct 15970358 GAGGCTTATCTGGG-CAAGAAAGTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAA 15970416
Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488
||| | || ||||| || || ||||||||||| |||||||| | || || | ||
Sbjct 15970417 TGATGCTCAGCGTCAGGCCACAAAAGATGCTGGTACCATTGCTGGGTTGAACGTGATGCG 15970476
Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
||||| ||||| || |||||||||||| ||||||| ||| | || ||
Sbjct 15970477 CATTATTAATGAGCCAACTGCTGCTGCAATTGCATACGGATTGGACAA 15970524
Score = 114 bits (126), Expect = 1e-19
Identities = 330/506 (65%), Gaps = 4/506 (1%)
Strand=Plus/Minus
Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146
||| | ||| ||||||| | | | || || ||||||||||| || || || || |
Sbjct 52953790 GATGCCAAGCTTGATAAGGGCCAGATCCAGGAGATTGTGCTTGTGGGGGGCTCCACTCGT 52953731
Query 552147 ATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204
|||||||| || | | || | ||| | | |||||||| ||| | | || | |
Sbjct 52953730 ATTCCTAAGATCCAGAAGTTGCTGCAAGATTTC--TTCAATGGCAAAGAGCTGAACAAGA 52953673
Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264
| | ||||||||||| |||||||| ||||||||||| | ||||||||||| || |
Sbjct 52953672 GCATCAATCCAGATGAAGCTGTTGCTTATGGTGCCGCTGTGCAAGCAGCTATCCTCATGG 52953613
Query 552265 GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324
|| | | |||||| | ||| || | | || | ||||| || || || || || |
Sbjct 52953612 GAGACAAGTCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTCCCTGG 52953553
Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384
| | || |||| ||| || | |||||| ||| ||| | | || || || |||||
Sbjct 52953552 GCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCATTCCCA 52953493
Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444
||| || | | || | || || ||||| || || | ||| | ||
Sbjct 52953492 CCAAACAAACACAGACCTTCACCACCTACTCAGACAACCAGAGCAGTGTCCTCGTCCAGG 52953433
Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAG 552504
| | |||||||||| | | ||||| || || || || || | ||| | ||
Sbjct 52953432 TATATGAAGGAGAACGTGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGACCTAA 52953373
Query 552505 AAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATG 552564
||| || || || || || |||||||| || || || || || ||||| || || ||||
Sbjct 52953372 CAGGCATCCCCCCAGCACCCCGTGGAGTTCCTCAGATCGAGGTCACTTTTGACATAGATG 52953313
Query 552565 CCAATGGAATTTTGAATGTGACTGCT 552590
| ||||| || |||| || | ||||
Sbjct 52953312 CTAATGGTATCCTGAACGTCAGTGCT 52953287
Score = 109 bits (120), Expect = 4e-18
Identities = 358/549 (65%), Gaps = 8/549 (1%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| || || || ||| | || ||||| ||| ||| || ||||| | || |||| |||
Sbjct 52954747 GCCATCGGCATCGATCTGGGCACCACGTATTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 52954688
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|| || || |||||||| || || || ||| | || || || ||||| | |||||
Sbjct 52954687 GTGGAGATCATTGCCAACGACCAGGGGAACCGCACCACACCCAGCTATGTGGCCTTCACC 52954628
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCA 550169
|| || || | | | || ||||| || || | |||| || || || || ||||
Sbjct 52954627 GATACAGAGCGCCTCATCGGGGATGCTGCCAAGAACCAAGTGGCAATG--AACCCCACCA 52954570
Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229
| || || |||||||| || ||| | || || | | | | |||| | || || |||
Sbjct 52954569 ACACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGT 52954510
Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289
| || |||||||| ||||| |||| | || || | ||| || || | | | ||
Sbjct 52954509 CGGACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGT-GCAG 52954451
Query 550290 CTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTA 550348
| |||| | | | || | || | ||||| | || |||||||| |
Sbjct 52954450 GTGGAGTACAAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCTATGGTGCTC 52954391
Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGTAAT 550407
| || ||||| | | || || | | | || || ||| ||| || ||| || ||
Sbjct 52954390 ACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGAAAA-AAGGTACAGAATGCTGTTAT 52954332
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
|| || || || || || || ||||| || || || || || ||||||||||| ||
Sbjct 52954331 CACAGTGCCCGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 52954272
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|||| ||||| || | |||||||||||||| || || || ||||| |||| |||||
Sbjct 52954271 CACTGGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATTGCCTATGG 52954212
Query 550528 ACTTGATAA 550536
| |||||
Sbjct 52954211 CTTGGATAA 52954203
>seq7078
Length=6280547
Score = 116 bits (128), Expect = 3e-20
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| ||| | ||||||||||| |||||||| ||||| || || || || || |||||||
Sbjct 3075196 ATGCTGTAGTCACTGTACCAGCCTATTTTAACGACTCCCAGCGACAGGCCACAAAAGATG 3075255
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
||||| ||||| || || ||||| || || ||||||||||| || || ||||||||
Sbjct 3075256 CTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACAGCTGCTGCTA 3075315
Query 550518 TTGCATATGGACTTGATAA 550536
| || || || || |||||
Sbjct 3075316 TAGCCTACGGTCTGGATAA 3075334
Score = 102 bits (112), Expect = 7e-16
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036
|||||||| | |||| | ||||| ||| | |||||||| ||| |||||||||||
Sbjct 3074227 ATGTCAAAGGGACCAGCTGTTGGTATCGATCTTGGAACCACCTATTCCTGTGTTGGTGTG 3074286
Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096
| ||| |||| || || ||||| ||||||||||| || |||||||| || || |||
Sbjct 3074287 TTCCAACATGGGAAGGTGGAAATCATTGCCAATGACCAGGGTAACAGGACCACGCCAAGC 3074346
Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCA 550154
|| || ||||||| || || || || |||| ||||| || || | |||| ||
Sbjct 3074347 TACGTCGCTTTCACAGATACAGAGAGGTTGATTGGCGATGCTGCCAAGAACCAAGTTGCA 3074406
Query 550155 CTGGTAATCCTACCAATAC 550173
|| ||||| ||||| ||
Sbjct 3074407 ATG--AATCCCACCAACAC 3074423
Score = 89.7 bits (98), Expect = 4e-12
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||| | || ||||| || |||||||| || |||||||| ||||||
Sbjct 3076893 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTCGATATTGATGCC 3076952
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
||||| || |||||||| ||||| |||||
Sbjct 3076953 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3076984
>seq6642
Length=9979828
Score = 96.9 bits (106), Expect = 3e-14
Identities = 157/224 (70%), Gaps = 4/224 (2%)
Strand=Plus/Minus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310
|||||| || || || ||||| ||||| ||| | ||| || ||||| |||| ||
Sbjct 6586854 CCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGG 6586797
Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370
|| | ||||| || || || || |||||||| || || |||||||||||||||||
Sbjct 6586796 GTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATG 6586737
Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430
|||||||| || || || || || || |||||| || ||| || | | |||
Sbjct 6586736 CCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCG 6586677
Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || | || || ||||| || || || ||||| || |||||
Sbjct 6586676 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
Score = 86.0 bits (94), Expect = 5e-11
Identities = 154/223 (69%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311
|| || || || || ||||| ||||| ||| | ||| || ||||| |||| || |
Sbjct 6586397 CTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGGG 6586340
Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371
| | |||||| || || || || ||||| || | || ||||||||||||||||| |
Sbjct 6586339 TGCGCCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGC 6586280
Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431
|||||||||| || || || || || |||||| || ||| || | | ||||
Sbjct 6586279 CTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGA 6586220
Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || | || || ||||| || || || || || || |||||
Sbjct 6586219 GGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028054536127750
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