Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1781 127 2e-24 seq2059 116 3e-21 seq7516 100 2e-16 >seq1781 Length=149560735 Score = 127 bits (140), Expect = 2e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| |||||||| ||||||||||| ||||| || || || ||||||| ||| Sbjct 102234824 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTC 102234883 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||||||| ||| | | || ||||| ||| |||| || || | || || ||||| | Sbjct 102234884 CCCCTCTTCTCTG-GTGCAAAACCCCTGCTTATCCAGGAACTCACGTGACCCATTGGCAT 102234942 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 |||| ||||| || ||||| | ||||||||||||| ||||| || || Sbjct 102234943 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 102234991 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| |||||||| || |||||||| ||||| || || |||||||||||||| || || Sbjct 102230706 AGCCCTGTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGC 102230765 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || || |||||||| || || || || || || || || | Sbjct 102230766 ACTCCTAGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGA 102230825 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | | ||||| || || | |||||| || Sbjct 102230826 ACATAGAACTGGCAAAGAGCATGGCAAGGTGGCAAAGCCATCAG 102230869 >seq2059 Length=10123 Score = 116 bits (128), Expect = 3e-21 Identities = 131/170 (77%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGG-AACCCGTACACCGGTCCCAGGT 30208 |||||| |||| |||||||| ||||||||||| ||| || || || || ||||||| || Sbjct 8725 CATGTCTTTGTAATCTGCTCCAAAATGCCTCCATTGGGAAACCATAAACTGGTCCCAAGT 8666 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCT-CTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 30267 | |||||||| ||| | | || ||||| ||| |||| || || | || || ||||| Sbjct 8665 C-CCCTCTTCTCTGGGTGCAAAACCCCTGCTTATCCAGGAACTCACGTGA-CCATTGGCA 8608 Query 30268 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 30317 ||||| ||||| || ||||| | ||||||||||||| ||||| || || Sbjct 8607 TCCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 8558 >seq7516 Length=82310166 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| |||| || || |||||| | ||||| | |||||| || || Sbjct 64054995 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGGA 64054936 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| ||||||||||||| | ||||| || ||| Sbjct 64054935 ATGGAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 64054888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408500693866175