Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6387 107 1e-18 >seq6387 Length=12762846 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||||| || || ||| ||| || || || ||||| ||||| Sbjct 4540638 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4540579 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| || ||||| ||||| | ||||||||| | |||| Sbjct 4540578 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGA 4540519 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCA---CAGACTCTGACGCCTCC 48716 | |||||||||||| ||||| || || | | || | | ||| | ||| Sbjct 4540518 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTGTCGCTG--GGTTCC 4540462 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||||| || || || || || ||||| || || ||||| ||||||||| Sbjct 4540461 ACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATC 4540411 Score = 105 bits (116), Expect = 5e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || |||| ||||| ||| || ||| ||| || || || ||||| || || Sbjct 4540410 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4540351 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||| |||||| || ||||| ||||| | ||| ||||| | |||| Sbjct 4540350 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 4540291 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCA 48717 | |||||||||||| ||||| || || | | || | | | || | ||| | Sbjct 4540290 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCA-ATGGTGTCACTGGGCTCGA 4540233 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || || || || ||||| || || ||||| |||||||| Sbjct 4540232 CCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| || | ||| || ||| ||| || || || ||||| || || Sbjct 4540183 GCCACCCCTGAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 4540124 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| || || || ||||| | ||| ||||| | ||| Sbjct 4540123 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 4540064 Query 48659 AACGCCCTCCTTGTC 48673 || |||||||||||| Sbjct 4540063 AATGCCCTCCTTGTC 4540049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380828613157425