Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq6387 107 1e-18
>seq6387
Length=12762846
Score = 107 bits (118), Expect = 1e-18
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || |||| ||||| || || ||| ||| || || || ||||| |||||
Sbjct 4540638 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4540579
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || |||| |||||| || ||||| ||||| | ||||||||| | ||||
Sbjct 4540578 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGATCGGGGGGA 4540519
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCA---CAGACTCTGACGCCTCC 48716
| |||||||||||| ||||| || || | | || | | ||| | |||
Sbjct 4540518 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCAATGGTGTCGCTG--GGTTCC 4540462
Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||||| || || || || || ||||| || || ||||| |||||||||
Sbjct 4540461 ACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATC 4540411
Score = 105 bits (116), Expect = 5e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || |||| ||||| ||| || ||| ||| || || || ||||| || ||
Sbjct 4540410 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4540351
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | || | || |||| |||||| || ||||| ||||| | ||| ||||| | ||||
Sbjct 4540350 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 4540291
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCA 48717
| |||||||||||| ||||| || || | | || | | | || | ||| |
Sbjct 4540290 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCA-ATGGTGTCACTGGGCTCGA 4540233
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| || || || || || ||||| || || ||||| ||||||||
Sbjct 4540232 CCTCCAGGGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || |||| || | ||| || ||| ||| || || || ||||| || ||
Sbjct 4540183 GCCACCCCTGAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 4540124
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | || |||| |||| |||||| || || || ||||| | ||| ||||| | |||
Sbjct 4540123 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 4540064
Query 48659 AACGCCCTCCTTGTC 48673
|| ||||||||||||
Sbjct 4540063 AATGCCCTCCTTGTC 4540049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380828613157425
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |