Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq7516 125 1e-23
seq7311 118 2e-21
seq5491 93.3 8e-14
seq1 93.3 8e-14
seq2929 84.2 4e-11
>seq7516
Length=82310166
Score = 125 bits (138), Expect = 1e-23
Identities = 111/139 (80%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548
||| ||| ||||||| |||||||||||||| |||||||| ||||| || | |||||||||
Sbjct 53645525 CTTCAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCTCCGGCGGCA 53645466
Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608
|||| ||| || | ||||||||| || | ||| || |||||||| | ||| ||||||
Sbjct 53645465 CTTGGAGGCCGCGATGCGGTTCCGAAGCCGCTTGCGCTCCGCCTTCAGGCGCTCCTGGCT 53645406
Query 241609 CTCCATGTCGATCGGAGAC 241627
|||| ||| | ||| |||
Sbjct 53645405 CTCCGCGTCCAGCGGCGAC 53645387
>seq7311
Length=4974273
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
|| |||| ||| ||||| || |||||||| || || || | | ||||| || |||
Sbjct 3992233 AGCACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCCAGC 3992174
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | |||||| |||||| ||||||||||| || | |||||| ||||||
Sbjct 3992173 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATGCGCTCCAGT 3992114
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|| | | |||||| |||| ||| || | |||||||| || | || || ||||| |||
Sbjct 3992113 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGTTTCCGCTCCGCTTTG 3992054
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||| ||||| || |||
Sbjct 3992053 ATGCGCTCCTGCGTGTCCATATCGATGGGGGAC 3992021
>seq5491
Length=24091566
Score = 93.3 bits (102), Expect = 8e-14
Identities = 75/91 (82%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 38965 GCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTAC 39024
||||||| | |||||||||||| |||||||| || |||||||| ||||||||| ||| |
Sbjct 4776221 GCTCCCAGCGGTTGGCGGAGAACAGCAGGTGCACGGCGTGGTCCTCCAGCTCCCTCTCCC 4776162
Query 39025 TCTCCAGGTACGAGCTGATCATCTTTCCGAT 39055
|| ||||||| | ||||||| || |||||
Sbjct 4776161 TCGCCAGGTAGGCACTGATCAGCTGCCCGAT 4776131
>seq1
Length=196202544
Score = 93.3 bits (102), Expect = 8e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
||||||| |||||| || || || | ||| || || ||| ||||| |||| | | |
Sbjct 194684926 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 194684985
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| || |||| ||| || | || ||||| |||||||||||| ||||||||||
Sbjct 194684986 TCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGC 194685045
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963
|||| |||||||||||| || || || ||||
Sbjct 194685046 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 194685076
>seq2929
Length=111302122
Score = 84.2 bits (92), Expect = 4e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
|| || | |||||||||| | || || || ||| |||||||| | || || | ||
Sbjct 96934802 TCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 96934743
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
||||| ||||||| || ||||||||||| |||||||| || |||||||| || || ||
Sbjct 96934742 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGC 96934684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931259453344000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |