Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4328 132 3e-25 seq7078 95.1 8e-14 seq6642 89.7 3e-12 >seq4328 Length=59825302 Score = 132 bits (146), Expect = 3e-25 Identities = 174/236 (74%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 474642 AAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAA 474701 |||| ||| |||| | || ||| |||||||| | ||||| | | || |||||| ||| Sbjct 15970293 AAACAAAAACATTTGCTCCTGAAGAAATTTCTGCCATGGTCCTGACAAAGATGAAAGAAA 15970352 Query 474702 CCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATA 474759 | || ||| | ||||| || |||||| || ||| |||| || ||||||| ||||| || Sbjct 15970353 CTGCAGAGG-CTTATCTGGG-CAAGAAAGTTACTCATGCTGTTGTTACTGTGCCAGCCTA 15970410 Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819 || |||||| |||| ||||| || || |||||||| || | ||||| || | || || Sbjct 15970411 CTTCAATGATGCTCAGCGTCAGGCCACAAAAGATGCTGGTACCATTGCTGGGTTGAACGT 15970470 Query 474820 TTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 | || ||||||||||| ||||| || || ||| |||| || || | || |||| Sbjct 15970471 GATGCGCATTATTAATGAGCCAACTGCTGCTGCAATTGCATACGGATTGGACAAGA 15970526 >seq7078 Length=6280547 Score = 95.1 bits (104), Expect = 8e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || || ||||||||||| Sbjct 3076893 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTCGATATTGATGCC 3076952 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 3076953 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3076984 Score = 91.5 bits (100), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 474511 TATTTTT----GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAAT 474566 ||||||| ||||| ||| | |||||||| |||| ||||||||| | |||||| | Sbjct 3074871 TATTTTTTCCAGATGCAAAACGGTTGATTGGGCGTAGATTTGATGATTCTGTTGTCCAGT 3074930 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATA--TATAGA 474624 |||||||| ||||||||||| | ||| | |||| || ||| | ||| | | || Sbjct 3074931 CTGATATGAAGCATTGGCCTTTCACTGTGGTGAATGATGCTGGCAGGCCAAAAGTCCAGG 3074990 Query 474625 AGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 | |||||| ||| || || || || | || ||| |||||||||| ||||| | Sbjct 3074991 TGGAATACA--AAGGAGAGACAAAGAGCTTCTACCCAGAAGAAATTTCTTCCATGGTCCT 3075048 Query 474685 AGCCAAAATGAAACAAACCGCGAGCTCATATCTTGG 474720 | | |||||||| ||| || |||||||||| Sbjct 3075049 AACGAAAATGAAGGAAATTGCAGAAGCATATCTTGG 3075084 >seq6642 Length=9979828 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| ||||||||||| || | || |||||||||||||| ||||| ||| Sbjct 6586787 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTG 6586728 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| || ||| ||||| || ||| || | | || ||||| || Sbjct 6586727 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 6586668 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || Sbjct 6586667 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTG 6586636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267172243349300