Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq4328 132 3e-25
seq7078 95.1 8e-14
seq6642 89.7 3e-12
>seq4328
Length=59825302
Score = 132 bits (146), Expect = 3e-25
Identities = 174/236 (74%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 474642 AAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAA 474701
|||| ||| |||| | || ||| |||||||| | ||||| | | || |||||| |||
Sbjct 15970293 AAACAAAAACATTTGCTCCTGAAGAAATTTCTGCCATGGTCCTGACAAAGATGAAAGAAA 15970352
Query 474702 CCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATA 474759
| || ||| | ||||| || |||||| || ||| |||| || ||||||| ||||| ||
Sbjct 15970353 CTGCAGAGG-CTTATCTGGG-CAAGAAAGTTACTCATGCTGTTGTTACTGTGCCAGCCTA 15970410
Query 474760 TTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGT 474819
|| |||||| |||| ||||| || || |||||||| || | ||||| || | || ||
Sbjct 15970411 CTTCAATGATGCTCAGCGTCAGGCCACAAAAGATGCTGGTACCATTGCTGGGTTGAACGT 15970470
Query 474820 TTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875
| || ||||||||||| ||||| || || ||| |||| || || | || ||||
Sbjct 15970471 GATGCGCATTATTAATGAGCCAACTGCTGCTGCAATTGCATACGGATTGGACAAGA 15970526
>seq7078
Length=6280547
Score = 95.1 bits (104), Expect = 8e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|||||||| |||||||||||||| || ||||| |||||||| || || |||||||||||
Sbjct 3076893 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTCGATATTGATGCC 3076952
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181
||||| || || ||||| ||||| |||||
Sbjct 3076953 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3076984
Score = 91.5 bits (100), Expect = 1e-12
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 474511 TATTTTT----GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAAT 474566
||||||| ||||| ||| | |||||||| |||| ||||||||| | |||||| |
Sbjct 3074871 TATTTTTTCCAGATGCAAAACGGTTGATTGGGCGTAGATTTGATGATTCTGTTGTCCAGT 3074930
Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATA--TATAGA 474624
|||||||| ||||||||||| | ||| | |||| || ||| | ||| | | ||
Sbjct 3074931 CTGATATGAAGCATTGGCCTTTCACTGTGGTGAATGATGCTGGCAGGCCAAAAGTCCAGG 3074990
Query 474625 AGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684
| |||||| ||| || || || || | || ||| |||||||||| ||||| |
Sbjct 3074991 TGGAATACA--AAGGAGAGACAAAGAGCTTCTACCCAGAAGAAATTTCTTCCATGGTCCT 3075048
Query 474685 AGCCAAAATGAAACAAACCGCGAGCTCATATCTTGG 474720
| | |||||||| ||| || ||||||||||
Sbjct 3075049 AACGAAAATGAAGGAAATTGCAGAAGCATATCTTGG 3075084
>seq6642
Length=9979828
Score = 89.7 bits (98), Expect = 3e-12
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
||||| || ||||| ||||||||||| || | || |||||||||||||| ||||| |||
Sbjct 6586787 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTG 6586728
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| || ||| ||||| || ||| || | | || ||||| ||
Sbjct 6586727 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 6586668
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||| ||||| || ||
Sbjct 6586667 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTG 6586636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267172243349300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |