Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq7516 233 2e-56 seq5650 217 2e-51 >seq7516 Length=82310166 Score = 233 bits (258), Expect = 2e-56 Identities = 606/918 (66%), Gaps = 7/918 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || ||| |||| ||| | ||||| || ||||| || || || | Sbjct 37363690 TGTGTCGCAAATATTCTTCCAAACACTTCACGGCAAAAGGATCAACATCAGTATCAAACT 37363631 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | || ||||||| || ||||| |||||||| Sbjct 37363630 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAGATCTCCTACCCCGAACA 37363574 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || | || |||| || ||||| | || ||||| | ||||| Sbjct 37363573 CACAGACAGAGCGAACATGAATTCCACTGCATGGTGGGTAGGGCGCACCTTTAGACACGT 37363514 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | |||||| ||||||||||||| ||||||||||| | ||| | ||| || || || | Sbjct 37363513 CTCCTTCGAAGTACTGCCACTTGACAAACCTGGCCAGCGCATTCATATCAGAAACATCAT 37363454 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || |||| || | ||| | || ||||| Sbjct 37363453 ACTTGT-CACTAGAAGAAACAGCACCTGGGACATCGGGGATTCTCTGAATTGTTGCCCAT 37363395 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || || || | |||| || Sbjct 37363394 AGGTACTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCAATAAATTTGAGGATTTTGCTA 37363335 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | |||| || | |||| | || ||||| || || || || || || Sbjct 37363334 TTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 37363275 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | |||||| | |||||| ||| ||||| ||| || | Sbjct 37363274 ATTGGAGTACTGAGAGGCGGTAGTTGTTTGTCTATACCTGTGTTTTTCACTTTACCATCA 37363215 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 || | | | | | || |||||||| || || | ||||| ||| || || Sbjct 37363214 ACAATCTCATAGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCGGTTTCC 37363155 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||||| Sbjct 37363154 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCCGGTTGGTCTTGATA 37363095 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | || ||||| || | || | || Sbjct 37363094 GGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCTTCTATAGAGA 37363035 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||||||||||||||||||||| | |||||| ||||| || || || ||||| Sbjct 37363034 TCTTTCATGCAATTAATATCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCT 37362975 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 || | |||| | |||||| ||||| ||||| || || ||||| ||| | | | || Sbjct 37362974 AGCTGGCTGGATATAAAGACATTATCAAAACAGGAGACTATTCCTTTCACAG-CTGTAAA 37362916 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | ||| || || || | ||| || | |||||||| || ||||| Sbjct 37362915 AAAAGATTCTGGAGATTTTTTATCAACATGGATGCAGTAAAAATTCTGAGGAGCATAGAT 37362856 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 37362855 TGATCTCAGAAGTCTGTCAAGCATCTCGATTTTGTGATAAACCACTATTGAGTAAGCAAT 37362796 Query 160943 CGGAAACTCGGTCTCCTC 160960 ||||| || | ||||| Sbjct 37362795 TGGAAATTCTGCTTCCTC 37362778 >seq5650 Length=20435342 Score = 217 bits (240), Expect = 2e-51 Identities = 603/913 (66%), Gaps = 34/913 (4%) Strand=Plus/Plus Query 160062 TCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGG 160121 || ||||| |||| |||| |||| || || |||||| || || || || || ||| Sbjct 5342468 TCGAGACACTGGATGGCGGCATCGTCTACTTCGGAGTCGAACTTGTTGGCCAAGAGGTGG 5342527 Query 160122 TGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATG 160181 || | | | || |||||| |||||| |||| |||| | | ||||||| || | Sbjct 5342528 TGT---TGCCGCAGCATCCAGGCCACGTCCCCGGCCCCGTAGATGCAGACGCTGCGCTGG 5342584 Query 160182 TGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT--CACCTTCGTAGTACT 160239 |||| |||| |||||||| | ||||| || | ||| | || || ||||| Sbjct 5342585 AAGCGGCCGGTGCAGGGCGGGTAGGGCGCTCCG--CGGCTCGTGTCCCCGTCCAGGTACT 5342642 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 ||||||| || | | || | ||| | ||||||||| | | | | |||| | ||| Sbjct 5342643 GCCACTTGACCAGGCGGGGCAGCGCGTTCATGTCGGACATCTGGAACTTGTCGTTGTGGG 5342702 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 | ||||| ||||| || |||||| || | || |||||||||| ||| |||||||||| Sbjct 5342703 GCACGGCGCCGGGCACACCGGGCGCGCGGTTCAGCGTGGCCCACACGTGCTCGTCGGGGC 5342762 Query 160360 TGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAACCT----GTCCCGCAGAAC 160414 |||| |||||||| | ||| || | ||||| || || ||| |||| ||| || Sbjct 5342763 TGTAGGTGTCCTTGGCCCACTCGAGGAACTGCTGCG-----CCTCGGGGTCCTCCAGCAC 5342817 Query 160415 GTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGG 160474 ||| ||| ||| | ||||| | | ||| |||||||| | ||| || || | | Sbjct 5342818 GTGCCGCACGAAGGCCCGCGTCACCGCGATGTAGGCGCTGCCCGTGAACATGGGCGAGCG 5342877 Query 160475 TATAGGCGGC-GTGTCTTTGTCCTGACCG-GTGTTAGACACCACTCCTTTCACCAGCGCG 160532 | |||||| | | ||| | || ||| | | || ||| || ||| | Sbjct 5342878 GAGCGGCGGCGGCGGCTTCTCCGTGGCCGTGCGGACGA-TGAACTGCT----CCACTTGG 5342932 Query 160533 TGTCGCTTCTTCCACCTGACCATCTTGT--GCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 || || | |||||| | || ||||| || || | | | |||| ||| | |||| Sbjct 5342933 TGGCGGTACTTCCAGCGCTCCTGCTTGTAGGCCGTCGGCTTC--TCCGACTCCATGCTGT 5342990 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | || | ||| |||| ||| |||| ||| ||||||| || |||| Sbjct 5342991 TCTGCCCCTGCAGCACCCGCAGCGCGCGGACCGTCTCCGCGTTGGTCTTGATGGGGAAGT 5343050 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTC---GCGCTCAGGTCGTGCAGGTCCC 160707 |||| ||||| ||| | ||||| ||| | | |||| | |||||||| Sbjct 5343051 CGGTGCCGCAGGTGTTGAGGACGTAGCGCCAGGGCACGGGGCTCCG---CAGCAGGTCCT 5343107 Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 |||||| || | || ||||||| ||| |||||| |||||||| ||| |||| || Sbjct 5343108 GCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTACACCACGCTCTCCAGAC 5343167 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 |||||||| |||||||| ||| || | |||| || ||| ||| | ||| Sbjct 5343168 GGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCCCGCACGGCCTGCTGGAAGG 5343227 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 ||||| | ||||||||||||||| || | |||||| || ||||||| || | Sbjct 5343228 CGGCGGGGGCCTTGCTGTCCACGTGCACGCAGTAGACGTTCTGCGGGGCGTAGAGGGAGC 5343287 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 || | || |||||||||||| ||||| || ||||| || || |||||||| || || | Sbjct 5343288 GCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACCATGGAGTAGGCGATGGGGA 5343347 Query 160948 ACTCGGTCTCCTC 160960 | |||| |||||| Sbjct 5343348 AGTCGGCCTCCTC 5343360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577049822241000