Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq7516 233 2e-56
seq5650 217 2e-51
>seq7516
Length=82310166
Score = 233 bits (258), Expect = 2e-56
Identities = 606/918 (66%), Gaps = 7/918 (1%)
Strand=Plus/Minus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||||| || ||| |||| ||| | ||||| || ||||| || || || |
Sbjct 37363690 TGTGTCGCAAATATTCTTCCAAACACTTCACGGCAAAAGGATCAACATCAGTATCAAACT 37363631
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || || | ||||| ||| | || ||||||| || ||||| ||||||||
Sbjct 37363630 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAGATCTCCTACCCCGAACA 37363574
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| ||||| || || | || | || |||| || ||||| | || ||||| | |||||
Sbjct 37363573 CACAGACAGAGCGAACATGAATTCCACTGCATGGTGGGTAGGGCGCACCTTTAGACACGT 37363514
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
| |||||| ||||||||||||| ||||||||||| | ||| | ||| || || || |
Sbjct 37363513 CTCCTTCGAAGTACTGCCACTTGACAAACCTGGCCAGCGCATTCATATCAGAAACATCAT 37363454
Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343
| |||| || || | ||| ||||| || || |||| || | ||| | || |||||
Sbjct 37363453 ACTTGT-CACTAGAAGAAACAGCACCTGGGACATCGGGGATTCTCTGAATTGTTGCCCAT 37363395
Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403
|||| || || |||||||| ||||| || | ||| || || || | |||| ||
Sbjct 37363394 AGGTACTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCAATAAATTTGAGGATTTTGCTA 37363335
Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463
| | |||| || | |||| | || ||||| || || || || || ||
Sbjct 37363334 TTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 37363275
Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523
|| || | | |||||| | |||||| ||| ||||| ||| || |
Sbjct 37363274 ATTGGAGTACTGAGAGGCGGTAGTTGTTTGTCTATACCTGTGTTTTTCACTTTACCATCA 37363215
Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583
|| | | | | | || |||||||| || || | ||||| ||| || ||
Sbjct 37363214 ACAATCTCATAGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCGGTTTCC 37363155
Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643
| ||||| |||| | || | ||| | | || || || || |||| |||||||
Sbjct 37363154 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCCGGTTGGTCTTGATA 37363095
Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703
|||||||| | || || | |||||| | || ||||| || | || | ||
Sbjct 37363094 GGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCTTCTATAGAGA 37363035
Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763
|| ||||||||||||||||||||||||| | |||||| ||||| || || || |||||
Sbjct 37363034 TCTTTCATGCAATTAATATCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCT 37362975
Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823
|| | |||| | |||||| ||||| ||||| || || ||||| ||| | | | ||
Sbjct 37362974 AGCTGGCTGGATATAAAGACATTATCAAAACAGGAGACTATTCCTTTCACAG-CTGTAAA 37362916
Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882
|| | || | | ||| || || || | ||| || | |||||||| || |||||
Sbjct 37362915 AAAAGATTCTGGAGATTTTTTATCAACATGGATGCAGTAAAAATTCTGAGGAGCATAGAT 37362856
Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942
| || || | || || | |||||| || || |||| | ||| || ||||| || ||
Sbjct 37362855 TGATCTCAGAAGTCTGTCAAGCATCTCGATTTTGTGATAAACCACTATTGAGTAAGCAAT 37362796
Query 160943 CGGAAACTCGGTCTCCTC 160960
||||| || | |||||
Sbjct 37362795 TGGAAATTCTGCTTCCTC 37362778
>seq5650
Length=20435342
Score = 217 bits (240), Expect = 2e-51
Identities = 603/913 (66%), Gaps = 34/913 (4%)
Strand=Plus/Plus
Query 160062 TCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGG 160121
|| ||||| |||| |||| |||| || || |||||| || || || || || |||
Sbjct 5342468 TCGAGACACTGGATGGCGGCATCGTCTACTTCGGAGTCGAACTTGTTGGCCAAGAGGTGG 5342527
Query 160122 TGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATG 160181
|| | | | || |||||| |||||| |||| |||| | | ||||||| || |
Sbjct 5342528 TGT---TGCCGCAGCATCCAGGCCACGTCCCCGGCCCCGTAGATGCAGACGCTGCGCTGG 5342584
Query 160182 TGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT--CACCTTCGTAGTACT 160239
|||| |||| |||||||| | ||||| || | ||| | || || |||||
Sbjct 5342585 AAGCGGCCGGTGCAGGGCGGGTAGGGCGCTCCG--CGGCTCGTGTCCCCGTCCAGGTACT 5342642
Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299
||||||| || | | || | ||| | ||||||||| | | | | |||| | |||
Sbjct 5342643 GCCACTTGACCAGGCGGGGCAGCGCGTTCATGTCGGACATCTGGAACTTGTCGTTGTGGG 5342702
Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359
| ||||| ||||| || |||||| || | || |||||||||| ||| ||||||||||
Sbjct 5342703 GCACGGCGCCGGGCACACCGGGCGCGCGGTTCAGCGTGGCCCACACGTGCTCGTCGGGGC 5342762
Query 160360 TGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAACCT----GTCCCGCAGAAC 160414
|||| |||||||| | ||| || | ||||| || || ||| |||| ||| ||
Sbjct 5342763 TGTAGGTGTCCTTGGCCCACTCGAGGAACTGCTGCG-----CCTCGGGGTCCTCCAGCAC 5342817
Query 160415 GTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGG 160474
||| ||| ||| | ||||| | | ||| |||||||| | ||| || || | |
Sbjct 5342818 GTGCCGCACGAAGGCCCGCGTCACCGCGATGTAGGCGCTGCCCGTGAACATGGGCGAGCG 5342877
Query 160475 TATAGGCGGC-GTGTCTTTGTCCTGACCG-GTGTTAGACACCACTCCTTTCACCAGCGCG 160532
| |||||| | | ||| | || ||| | | || ||| || ||| |
Sbjct 5342878 GAGCGGCGGCGGCGGCTTCTCCGTGGCCGTGCGGACGA-TGAACTGCT----CCACTTGG 5342932
Query 160533 TGTCGCTTCTTCCACCTGACCATCTTGT--GCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590
|| || | |||||| | || ||||| || || | | | |||| ||| | ||||
Sbjct 5342933 TGGCGGTACTTCCAGCGCTCCTGCTTGTAGGCCGTCGGCTTC--TCCGACTCCATGCTGT 5342990
Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650
| || | ||| |||| ||| |||| ||| ||||||| || ||||
Sbjct 5342991 TCTGCCCCTGCAGCACCCGCAGCGCGCGGACCGTCTCCGCGTTGGTCTTGATGGGGAAGT 5343050
Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTC---GCGCTCAGGTCGTGCAGGTCCC 160707
|||| ||||| ||| | ||||| ||| | | |||| | ||||||||
Sbjct 5343051 CGGTGCCGCAGGTGTTGAGGACGTAGCGCCAGGGCACGGGGCTCCG---CAGCAGGTCCT 5343107
Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767
|||||| || | || ||||||| ||| |||||| |||||||| ||| |||| ||
Sbjct 5343108 GCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTACACCACGCTCTCCAGAC 5343167
Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827
|||||||| |||||||| ||| || | |||| || ||| ||| | |||
Sbjct 5343168 GGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCCCGCACGGCCTGCTGGAAGG 5343227
Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887
||||| | ||||||||||||||| || | |||||| || ||||||| || |
Sbjct 5343228 CGGCGGGGGCCTTGCTGTCCACGTGCACGCAGTAGACGTTCTGCGGGGCGTAGAGGGAGC 5343287
Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947
|| | || |||||||||||| ||||| || ||||| || || |||||||| || || |
Sbjct 5343288 GCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACCATGGAGTAGGCGATGGGGA 5343347
Query 160948 ACTCGGTCTCCTC 160960
| |||| ||||||
Sbjct 5343348 AGTCGGCCTCCTC 5343360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577049822241000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |