Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 223 5e-52 seq1781 185 1e-40 seq2929 100 5e-15 >seq1 Length=196202544 Score = 223 bits (246), Expect = 5e-52 Identities = 203/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48184723 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48184664 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48184663 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48184604 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||||||||||||||||| Sbjct 48184603 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCA 48184544 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48184543 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48184484 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48184483 ACACGTAGATCGAGTA 48184468 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 15923217 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 15923276 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 15923277 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 15923336 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 15923337 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 15923396 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 15923397 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 15923456 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 15923457 ACACGTAGATCGAGTA 15923472 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48095508 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48095567 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48095568 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48095627 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 48095628 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48095687 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48095688 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48095747 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48095748 ACACGTAGATCGAGTA 48095763 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48111702 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48111643 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48111642 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48111583 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 48111582 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48111523 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48111522 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48111463 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48111462 ACACGTAGATCGAGTA 48111447 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48119808 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACTGCGTGCTTGGCCAGCTCGCCGGGCA 48119867 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48119868 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48119927 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 48119928 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48119987 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48119988 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48120047 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48120048 ACACGTAGATCGAGTA 48120063 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48126579 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48126520 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48126519 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48126460 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 48126459 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48126400 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48126399 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48126340 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48126339 ACACGTAGATCGAGTA 48126324 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48178458 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48178399 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48178398 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48178339 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 48178338 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48178279 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48178278 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48178219 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48178218 ACACGTAGATCGAGTA 48178203 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48194882 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48194823 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48194822 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48194763 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 48194762 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48194703 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48194702 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48194643 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48194642 ACACGTAGATCGAGTA 48194627 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48199105 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48199164 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48199165 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48199224 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 48199225 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48199284 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48199285 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48199344 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48199345 ACACGTAGATCGAGTA 48199360 >seq1781 Length=149560735 Score = 185 bits (204), Expect = 1e-40 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 146397 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 146338 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 146337 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 146278 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 146277 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 146218 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 |||| ||| | ||| |||||| || ||| |||||||||||| Sbjct 146217 TGATGCCCATGGCCTTGGAGGAGATACCTGTGTCAGGGTGCACCTGC 146171 >seq2929 Length=111302122 Score = 100 bits (110), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 96932378 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCATGG 96932319 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || || || ||||||||| || |||||||| || Sbjct 96932318 TACTGGATGGGGAAAATGACGAACCGCCGGGGGTTCTCCCGCAGCAGCGGTTC 96932266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913749257180525