Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1 223 5e-52
seq1781 185 1e-40
seq2929 100 5e-15
>seq1
Length=196202544
Score = 223 bits (246), Expect = 5e-52
Identities = 203/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 48184723 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48184664
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 48184663 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48184604
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||||||||||||||
Sbjct 48184603 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCA 48184544
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 48184543 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48184484
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 48184483 ACACGTAGATCGAGTA 48184468
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 15923217 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 15923276
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 15923277 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 15923336
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 15923337 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 15923396
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 15923397 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 15923456
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 15923457 ACACGTAGATCGAGTA 15923472
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 48095508 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48095567
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 48095568 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48095627
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 48095628 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48095687
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 48095688 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48095747
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 48095748 ACACGTAGATCGAGTA 48095763
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 48111702 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48111643
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 48111642 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48111583
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 48111582 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48111523
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 48111522 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48111463
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 48111462 ACACGTAGATCGAGTA 48111447
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 48119808 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACTGCGTGCTTGGCCAGCTCGCCGGGCA 48119867
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 48119868 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48119927
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 48119928 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48119987
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 48119988 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48120047
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 48120048 ACACGTAGATCGAGTA 48120063
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 48126579 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48126520
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 48126519 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48126460
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 48126459 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48126400
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 48126399 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48126340
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 48126339 ACACGTAGATCGAGTA 48126324
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 48178458 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48178399
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 48178398 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48178339
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 48178338 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48178279
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 48178278 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48178219
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 48178218 ACACGTAGATCGAGTA 48178203
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 48194882 TGTACTTGGTGACCGCCTTGGTGCCCTCCGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48194823
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 48194822 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48194763
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 48194762 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48194703
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 48194702 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48194643
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 48194642 ACACGTAGATCGAGTA 48194627
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 48199105 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48199164
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 48199165 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48199224
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 48199225 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48199284
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 48199285 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48199344
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 48199345 ACACGTAGATCGAGTA 48199360
>seq1781
Length=149560735
Score = 185 bits (204), Expect = 1e-40
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 146397 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 146338
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 146337 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 146278
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 146277 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 146218
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696
|||| ||| | ||| |||||| || ||| ||||||||||||
Sbjct 146217 TGATGCCCATGGCCTTGGAGGAGATACCTGTGTCAGGGTGCACCTGC 146171
>seq2929
Length=111302122
Score = 100 bits (110), Expect = 5e-15
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362
|||||||| || ||||| ||||||||||||||||| |||||||||| ||| || |||
Sbjct 96932378 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCATGG 96932319
Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
|| |||||||||| | || || || ||||||||| || |||||||| ||
Sbjct 96932318 TACTGGATGGGGAAAATGACGAACCGCCGGGGGTTCTCCCGCAGCAGCGGTTC 96932266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7913749257180525
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