Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq4328 188 5e-42
seq7078 120 2e-21
seq3710 102 6e-16
>seq4328
Length=59825302
Score = 188 bits (208), Expect = 5e-42
Identities = 938/1472 (64%), Gaps = 30/1472 (2%)
Strand=Plus/Plus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
||| | || || || |||||||| ||||| | ||||| ||||| || || ||||| ||
Sbjct 52953288 GCACTGACGTTCAGGATACCATTAGCATCTATGTCAAAAGTGACCTCGATCTGAGGAACT 52953347
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | | || || ||||| ||| | | ||| | ||||| || || || |||
Sbjct 52953348 CCACGGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTA 52953407
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603
|| | ||||| || || | | |||| || | ||| | | || || ||||| |
Sbjct 52953408 GTCATAGCACGTTCTCCTTCATATACCTGGACGAGGACACTGC--TCTGGTTGTCTGAGT 52953465
Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662
| || || || |||| ||| ||| ||||| || ||||| | | || | |
Sbjct 52953466 AGGTGGTGAAGG-TCTGTGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 52953524
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | ||||||||||| || | || || || || || |||||||| | ||||
Sbjct 52953525 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 52953584
Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| || ||| | |||||| | | || | || ||||||||||| | ||| ||||||
Sbjct 52953585 AGATCTTGCACATTTTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCGGCACCA 52953644
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 281841
|| |||||||||||||| ||||| | | | || || | ||| |||||||| |||| |
Sbjct 52953645 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAGAAATCT 52953704
Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901
|| | || || | | |||||||||||||| || || || || | ||||| || ||
Sbjct 52953705 TGCAGCAACTTCT-GGATCTTAGGAATACGAGTGGAGCCCCCCACAAGCACAATCTCCTG 52953763
Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961
| ||| ||||| || || | ||| | | || || || || || || | |
Sbjct 52953764 GATCTGGCCCTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGGGTACC 52953823
Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 282019
| || | || | | ||||| || || || | ||| || || | || ||
Sbjct 52953824 ACGGAAAAGATCAGCATTGAGTTCCTCAAAGCGGGCACGAGT--GATGGAGGTGTAGAAG 52953881
Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079
||||| || || || | || |||| ||||| | | ||| || ||||| || | |
Sbjct 52953882 TCAATGCCCTCAAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 52953941
Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137
|| || || | ||||| ||||| | || | | | || | ||| |||| | |
Sbjct 52953942 CGCTTCGCCCTCTCACAAGCTGTACGCAGACGCCTCACTGC--TCGCTTATTGCCAGCAA 52953999
Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 282195
|| || | || | |||||| ||||| ||| | ||| |||| | || || ||
Sbjct 52954000 TGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAA--ATGGTTTACCATTCGGTTGTC 52954057
Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255
||| || || || |||| | || | |||| || | | | || | || | |||||
Sbjct 52954058 AAAGTCCTCCCCACCCAGGTGGGTGTCACCTGCTGTGGATTTCACCTCAAAGATGCCATC 52954117
Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315
|||| | | | | |||||| || || || |||| ||||| || || |||||
Sbjct 52954118 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 52954177
Query 282316 CATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369
| | ||| | || || ||||| | ||||| |||| |||||| || || ||
Sbjct 52954178 CTTCTCTCCAGCCCGGGTACCTTTCTTATCCAAGCCATAGGCAATAGCAGCTGCTGTGGG 52954237
Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429
||||| ||||| | || || ||||| |||| || | || |||||||| ||||| ||
Sbjct 52954238 CTCATTGATAATACGCATCACGTTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 52954297
Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTC 282488
| || || ||||| || || || || || || ||||| ||| |||| ||| | |||||
Sbjct 52954298 GCGCTGGGAGTCGTTGAAGTAAGCGGGCACTGTGATAACAGCATTCTG-TACCTTTTTTC 52954356
Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548
| | ||| || || | | ||||| || | | | ||| || || | ||||
Sbjct 52954357 CCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATAGAGCTGATCTCCTCTG 52954416
Query 282549 GAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607
| ||| | | ||| ||| | || || | | | || || ||| |
Sbjct 52954417 G-GAAGAAGGTCTTCATCTCACCCTTGTACTCCACCTGCACCTTGGGCTTGCCACCCTCG 52954475
Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 282667
|| | || || ||||| | ||||| || || || || | |||||| | | |
Sbjct 52954476 TTCACCACACGGAAGGGCCAGTGCTTCATGTCCGACTGCACTGTGGGGTCATCATACTTG 52954535
Query 282668 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATAT 282727
| || || | || || |||||||| || || ||||| || || | ||| |||| |
Sbjct 52954536 CGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCCACTTGGTTC 52954595
Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787
||||| ||||| || || || | ||||| || || || | ||||| || || |||
Sbjct 52954596 TTGGCAGCATCCCCGATGAGGCGCTCTGTATCGGTGAAGGCCACATAGCTGGGTGTGGTG 52954655
Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847
|| || || || || || ||||| || || ||||| |||| || | ||||| || |||
Sbjct 52954656 CGGTTCCCCTGGTCGTTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAA 52954715
Query 282848 CTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879
| | || || || | ||| || || || ||
Sbjct 52954716 GAATACGTGGTGCCCAGATCGATGCCGATGGC 52954747
Score = 134 bits (148), Expect = 1e-25
Identities = 520/807 (64%), Gaps = 25/807 (3%)
Strand=Plus/Minus
Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815
|||| | | || |||| ||| |||||||| || ||||| ||||| ||||||| |
Sbjct 15971100 AGAACACCAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGA 15971041
Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 281875
| | ||| |||||||| || | | || ||||||| || || || || ||||
Sbjct 15971040 GAAGGCTCTTTCCCATTGAAGAACTCTTTAACAAGTTGTTGTATTTTGGGGATGCGAGTA 15970981
Query 281876 GATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAA 281935
|| || ||||| | ||||| |||| | | || || | || | || || | |
Sbjct 15970980 GAACCACCAACAAGAACAATCTCATCAATATCAGACTTCTTTAGGTCAGAGTCTTCCAGA 15970921
Query 281936 ACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTA 281995
||||| | ||| || | | || | |||| || | |||||||| |||||
Sbjct 15970920 ACTTTCTGAACAGGCTTCATCGTAGAACGGAACAGATCCATATTCAGTTCTTCAAATTTG 15970861
Query 281996 GCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA 282055
|| | |||||| || || |||| |||||| || || || || | |||||| ||
Sbjct 15970860 GCACGAGTAAGCGTCTCAGAGAAATCCTCTCCTTCAAAAAAGGATTCTATTTCAATTCTA 15970801
Query 282056 GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC-ACATGCTGTCCTTAGTCTTCG 282114
| ||| | || || || || || || || || || | | ||| ||||| | |
Sbjct 15970800 GCTTGGTGCTGGGATGACAGGGCCCGCTTCGCTTTCTCTACTTCCCGTC-TTAGTTTCTG 15970742
Query 282115 TAAGGCTTTTGCTGAT-TGATTC---AAATCTGTTTTATATTTTCT-CTTGAA-ATCTTC 282168
|| ||| ||| | | ||| | |||| ||| | |||||| |||| | | ||
Sbjct 15970741 TACAGCT----CTGTTATCCTTCCTGACATCT-TTTCCTGTTTTCTTCTTGTAGAGTTTG 15970687
Query 282169 AACA----CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTC 282224
| | | |||| || ||| | ||||| ||||| || |||| | || | |
Sbjct 15970686 ATGAAGTGCTCCAT-----AACACGCTGGTCAAAGTCTTCTCCACCCAGGTGTGTGTCAC 15970632
Query 282225 CTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGG 282284
| ||||| |||| || | ||| | |||| | || || | |||||| |
Sbjct 15970631 CATTTGTAGCCACAACTTCAAAGACTCCGTTGTCAATTGTCAGGAGGGAGACATCAAAAG 15970572
Query 282285 TTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGAC 282344
|||||||||||| ||||| | ||| | ||| |||| ||| | || || | |
Sbjct 15970571 TTCCACCACCCAGGTCAAATACAAGGATGTTCTTTTCACCCTCTC---TCTTGTCCAATC 15970515
Query 282345 CATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAA 282404
| || |||| |||||||||||||| ||||||||||| | || || || | |||||||
Sbjct 15970514 CGTATGCAATTGCAGCAGCAGTTGGCTCATTAATAATGCGCATCACGTTCAACCCAGCAA 15970455
Query 282405 TTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 282464
| | || |||||||| ||||| || | || | ||| || || || || || |||||||
Sbjct 15970454 TGGTACCAGCATCTTTTGTGGCCTGACGCTGAGCATCATTGAAGTAGGCTGGCACAGTAA 15970395
Query 282465 TAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTA 282524
||| |||| || |||| || || | |||||| ||| |||| |||||| || | |
Sbjct 15970394 CAACAGCATGAGTAACTTTCTTGCCCAGATAAGCCTCTGCAGTTTCTTTCATCTTTGTCA 15970335
Query 282525 AAATCATTGATGAAATTTGTTCTGGAG 282551
| ||| | ||||||| ||| ||||
Sbjct 15970334 GGACCATGGCAGAAATTTCTTCAGGAG 15970308
>seq7078
Length=6280547
Score = 120 bits (132), Expect = 2e-21
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| ||||| ||||| || || | ||||||||| ||||| ||||| ||||||| || |||
Sbjct 3075337 TTCTTATCCAGACCGTAGGCTATAGCAGCAGCTGTTGGCTCATTGATAATTCGCAGTACA 3075278
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || || ||||| |||| |||||||| ||||| |||| || || |||||||||||
Sbjct 3075277 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTGGCCTGTCGCTGGGAGTCGTTAAAATAG 3075218
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480
|| || ||||| | || |||| |||||
Sbjct 3075217 GCTGGTACAGTGACTACAGCATTAGTTAC 3075189
>seq3710
Length=91282656
Score = 102 bits (112), Expect = 6e-16
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235
||| || || ||| | |||||||| ||||| || |||||| | ||| | | | |||||
Sbjct 34954074 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 34954133
Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295
|||||| || || |||||| | || ||| ||||| ||||||||||| ||||| |||||
Sbjct 34954134 TCATTATGGTGCCCCCAAGGAAATGGAATCCTATTACCAAGAAATTGGAAGAGCTGGTCG 34954193
Query 131296 TGATGG 131301
||||||
Sbjct 34954194 TGATGG 34954199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739477876705350
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