Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4328 188 5e-42 seq7078 120 2e-21 seq3710 102 6e-16 >seq4328 Length=59825302 Score = 188 bits (208), Expect = 5e-42 Identities = 938/1472 (64%), Gaps = 30/1472 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | || || || |||||||| ||||| | ||||| ||||| || || ||||| || Sbjct 52953288 GCACTGACGTTCAGGATACCATTAGCATCTATGTCAAAAGTGACCTCGATCTGAGGAACT 52953347 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || ||||| ||| | | ||| | ||||| || || || ||| Sbjct 52953348 CCACGGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCTTA 52953407 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAAT 281603 || | ||||| || || | | |||| || | ||| | | || || ||||| | Sbjct 52953408 GTCATAGCACGTTCTCCTTCATATACCTGGACGAGGACACTGC--TCTGGTTGTCTGAGT 52953465 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 52953466 AGGTGGTGAAGG-TCTGTGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 52953524 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || || || || || |||||||| | |||| Sbjct 52953525 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 52953584 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || ||| | |||||| | | || | || ||||||||||| | ||| |||||| Sbjct 52953585 AGATCTTGCACATTTTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCGGCACCA 52953644 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 281841 || |||||||||||||| ||||| | | | || || | ||| |||||||| |||| | Sbjct 52953645 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAGAAATCT 52953704 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || | || || | | |||||||||||||| || || || || | ||||| || || Sbjct 52953705 TGCAGCAACTTCT-GGATCTTAGGAATACGAGTGGAGCCCCCCACAAGCACAATCTCCTG 52953763 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| ||||| || || | ||| | | || || || || || || | | Sbjct 52953764 GATCTGGCCCTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAGGGTACC 52953823 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 282019 | || | || | | ||||| || || || | ||| || || | || || Sbjct 52953824 ACGGAAAAGATCAGCATTGAGTTCCTCAAAGCGGGCACGAGT--GATGGAGGTGTAGAAG 52953881 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 ||||| || || || | || |||| ||||| | | ||| || ||||| || | | Sbjct 52953882 TCAATGCCCTCAAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 52953941 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 || || || | ||||| ||||| | || | | | || | ||| |||| | | Sbjct 52953942 CGCTTCGCCCTCTCACAAGCTGTACGCAGACGCCTCACTGC--TCGCTTATTGCCAGCAA 52953999 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 282195 || || | || | |||||| ||||| ||| | ||| |||| | || || || Sbjct 52954000 TGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAA--ATGGTTTACCATTCGGTTGTC 52954057 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| || || || |||| | || | |||| || | | | || | || | ||||| Sbjct 52954058 AAAGTCCTCCCCACCCAGGTGGGTGTCACCTGCTGTGGATTTCACCTCAAAGATGCCATC 52954117 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| | | | | |||||| || || || |||| ||||| || || ||||| Sbjct 52954118 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 52954177 Query 282316 CATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 | | ||| | || || ||||| | ||||| |||| |||||| || || || Sbjct 52954178 CTTCTCTCCAGCCCGGGTACCTTTCTTATCCAAGCCATAGGCAATAGCAGCTGCTGTGGG 52954237 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||||| ||||| | || || ||||| |||| || | || |||||||| ||||| || Sbjct 52954238 CTCATTGATAATACGCATCACGTTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 52954297 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTC 282488 | || || ||||| || || || || || || ||||| ||| |||| ||| | ||||| Sbjct 52954298 GCGCTGGGAGTCGTTGAAGTAAGCGGGCACTGTGATAACAGCATTCTG-TACCTTTTTTC 52954356 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | ||| || || | | ||||| || | | | ||| || || | |||| Sbjct 52954357 CCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATAGAGCTGATCTCCTCTG 52954416 Query 282549 GAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607 | ||| | | ||| ||| | || || | | | || || ||| | Sbjct 52954417 G-GAAGAAGGTCTTCATCTCACCCTTGTACTCCACCTGCACCTTGGGCTTGCCACCCTCG 52954475 Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 282667 || | || || ||||| | ||||| || || || || | |||||| | | | Sbjct 52954476 TTCACCACACGGAAGGGCCAGTGCTTCATGTCCGACTGCACTGTGGGGTCATCATACTTG 52954535 Query 282668 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATAT 282727 | || || | || || |||||||| || || ||||| || || | ||| |||| | Sbjct 52954536 CGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCCACTTGGTTC 52954595 Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787 ||||| ||||| || || || | ||||| || || || | ||||| || || ||| Sbjct 52954596 TTGGCAGCATCCCCGATGAGGCGCTCTGTATCGGTGAAGGCCACATAGCTGGGTGTGGTG 52954655 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 || || || || || || ||||| || || ||||| |||| || | ||||| || ||| Sbjct 52954656 CGGTTCCCCTGGTCGTTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAA 52954715 Query 282848 CTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | | || || || | ||| || || || || Sbjct 52954716 GAATACGTGGTGCCCAGATCGATGCCGATGGC 52954747 Score = 134 bits (148), Expect = 1e-25 Identities = 520/807 (64%), Gaps = 25/807 (3%) Strand=Plus/Minus Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 |||| | | || |||| ||| |||||||| || ||||| ||||| ||||||| | Sbjct 15971100 AGAACACCAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGA 15971041 Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 281875 | | ||| |||||||| || | | || ||||||| || || || || |||| Sbjct 15971040 GAAGGCTCTTTCCCATTGAAGAACTCTTTAACAAGTTGTTGTATTTTGGGGATGCGAGTA 15970981 Query 281876 GATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAA 281935 || || ||||| | ||||| |||| | | || || | || | || || | | Sbjct 15970980 GAACCACCAACAAGAACAATCTCATCAATATCAGACTTCTTTAGGTCAGAGTCTTCCAGA 15970921 Query 281936 ACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTA 281995 ||||| | ||| || | | || | |||| || | |||||||| ||||| Sbjct 15970920 ACTTTCTGAACAGGCTTCATCGTAGAACGGAACAGATCCATATTCAGTTCTTCAAATTTG 15970861 Query 281996 GCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA 282055 || | |||||| || || |||| |||||| || || || || | |||||| || Sbjct 15970860 GCACGAGTAAGCGTCTCAGAGAAATCCTCTCCTTCAAAAAAGGATTCTATTTCAATTCTA 15970801 Query 282056 GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC-ACATGCTGTCCTTAGTCTTCG 282114 | ||| | || || || || || || || || || | | ||| ||||| | | Sbjct 15970800 GCTTGGTGCTGGGATGACAGGGCCCGCTTCGCTTTCTCTACTTCCCGTC-TTAGTTTCTG 15970742 Query 282115 TAAGGCTTTTGCTGAT-TGATTC---AAATCTGTTTTATATTTTCT-CTTGAA-ATCTTC 282168 || ||| ||| | | ||| | |||| ||| | |||||| |||| | | || Sbjct 15970741 TACAGCT----CTGTTATCCTTCCTGACATCT-TTTCCTGTTTTCTTCTTGTAGAGTTTG 15970687 Query 282169 AACA----CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTC 282224 | | | |||| || ||| | ||||| ||||| || |||| | || | | Sbjct 15970686 ATGAAGTGCTCCAT-----AACACGCTGGTCAAAGTCTTCTCCACCCAGGTGTGTGTCAC 15970632 Query 282225 CTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGG 282284 | ||||| |||| || | ||| | |||| | || || | |||||| | Sbjct 15970631 CATTTGTAGCCACAACTTCAAAGACTCCGTTGTCAATTGTCAGGAGGGAGACATCAAAAG 15970572 Query 282285 TTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGAC 282344 |||||||||||| ||||| | ||| | ||| |||| ||| | || || | | Sbjct 15970571 TTCCACCACCCAGGTCAAATACAAGGATGTTCTTTTCACCCTCTC---TCTTGTCCAATC 15970515 Query 282345 CATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAA 282404 | || |||| |||||||||||||| ||||||||||| | || || || | ||||||| Sbjct 15970514 CGTATGCAATTGCAGCAGCAGTTGGCTCATTAATAATGCGCATCACGTTCAACCCAGCAA 15970455 Query 282405 TTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 282464 | | || |||||||| ||||| || | || | ||| || || || || || ||||||| Sbjct 15970454 TGGTACCAGCATCTTTTGTGGCCTGACGCTGAGCATCATTGAAGTAGGCTGGCACAGTAA 15970395 Query 282465 TAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTA 282524 ||| |||| || |||| || || | |||||| ||| |||| |||||| || | | Sbjct 15970394 CAACAGCATGAGTAACTTTCTTGCCCAGATAAGCCTCTGCAGTTTCTTTCATCTTTGTCA 15970335 Query 282525 AAATCATTGATGAAATTTGTTCTGGAG 282551 | ||| | ||||||| ||| |||| Sbjct 15970334 GGACCATGGCAGAAATTTCTTCAGGAG 15970308 >seq7078 Length=6280547 Score = 120 bits (132), Expect = 2e-21 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| ||||| || || | ||||||||| ||||| ||||| ||||||| || ||| Sbjct 3075337 TTCTTATCCAGACCGTAGGCTATAGCAGCAGCTGTTGGCTCATTGATAATTCGCAGTACA 3075278 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| |||||||| ||||| |||| || || ||||||||||| Sbjct 3075277 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTGGCCTGTCGCTGGGAGTCGTTAAAATAG 3075218 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || ||||| | || |||| ||||| Sbjct 3075217 GCTGGTACAGTGACTACAGCATTAGTTAC 3075189 >seq3710 Length=91282656 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 34954074 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 34954133 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || |||||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 34954134 TCATTATGGTGCCCCCAAGGAAATGGAATCCTATTACCAAGAAATTGGAAGAGCTGGTCG 34954193 Query 131296 TGATGG 131301 |||||| Sbjct 34954194 TGATGG 34954199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739477876705350