Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq6642 114 1e-20
seq6387 82.4 7e-11
>seq6642
Length=9979828
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
|||||| | | ||||| || | ||| | || || ||||| || |||||||| ||
Sbjct 6586632 GCCTCCCCTCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 6586573
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
|| |||| | |||||| || || || |||||| |||||| | ||||||||||||||
Sbjct 6586572 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGG 6586513
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|||||||||||||| || || || | | ||| | ||||| |||| || ||
Sbjct 6586512 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATTGTGTCACTGGGCTCAAC 6586453
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | |||||||| ||||| ||||| ||||| || |||||
Sbjct 6586452 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 6586405
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256
|||| || | ||| | || || || || || |||||||| || || |||| | |
Sbjct 6586847 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 6586788
Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316
||||| || || || |||||| | ||||| | |||||||| ||||| ||||||||||||
Sbjct 6586787 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTG 6586728
Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376
|| || || || | | || | ||||| |||| || || || | || |
Sbjct 6586727 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 6586668
Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||||||| |||| || || ||||| || |||||
Sbjct 6586667 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6586633
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
|||||| | | |||| || | ||| | || || || || || |||||||| ||
Sbjct 6586176 GCCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 6586117
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
|| |||| | |||||| || || || |||||| |||||| | ||||||||||||||
Sbjct 6586116 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGG 6586057
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|||||||| ||||| || || || | | || | ||||| |||| || ||
Sbjct 6586056 AATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 6585997
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | |||||||| |||| || || || || || |||||
Sbjct 6585996 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6585949
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256
|||| || | ||| | || || || || || |||||||| || || |||| |
Sbjct 6586391 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 6586332
Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316
||||| || || ||||||||| |||||| | |||||||| ||||| |||||||||||
Sbjct 6586331 TCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCTTTA 6586272
Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376
|| || || || | | || | ||||| ||||||| || || | || |
Sbjct 6586271 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCGAGGGTGATG 6586212
Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||||||| |||| || || || || || |||||
Sbjct 6586211 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6586177
>seq6387
Length=12762846
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256
|||| || | ||| | || || || || || |||||||| ||| || |||| |
Sbjct 4540398 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCA 4540339
Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316
||||| || || || |||||| ||||||| | ||||||||||| || ||||| || |||
Sbjct 4540338 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTG 4540279
Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376
|| || || || | | || | ||||| |||| || || || | || |
Sbjct 4540278 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 4540219
Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||||||| ||||| || || || || || |||||
Sbjct 4540218 GTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 4540184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488400642870000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |