Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq3140 138 2e-27
seq2929 138 2e-27
>seq3140
Length=8478
Score = 138 bits (152), Expect = 2e-27
Identities = 127/161 (79%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438
|| ||||||||||| ||| | || ||||| || |||||| |||||||||| || |||||
Sbjct 7931 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTCTTCTTCATC 7990
Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498
|| ||||| ||||| || || |||| ||||| || || ||||| ||||| || |||||
Sbjct 7991 CTGAGGAAGAAGTTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 8050
Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539
||||| | ||| | |||||||| ||| ||||||| || ||
Sbjct 8051 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 8091
>seq2929
Length=111302122
Score = 138 bits (152), Expect = 2e-27
Identities = 127/161 (79%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438
|| ||||||||||| ||| | || ||||| || |||||| |||||||||| || |||||
Sbjct 79575007 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTCTTCTTCATC 79575066
Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498
|| ||||| ||||| || || |||| ||||| || || ||||| ||||| || |||||
Sbjct 79575067 CTGAGGAAGAAGTTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 79575126
Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539
||||| | ||| | |||||||| ||| ||||||| || ||
Sbjct 79575127 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 79575167
Score = 98.7 bits (108), Expect = 2e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600
|| ||||| || |||||| ||||| | ||||| |||||||||||||| | ||||| ||
Sbjct 79576965 GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTTATTATGTACATGTATTACGGA 79577024
Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660
| || || ||||| | || || | |||||| | |||||||| || ||| | ||||||
Sbjct 79577025 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAGTATCTGTGGTGGAAACGATACTTGACTATA 79577084
Query 58661 ATGCAATTGGTA 58672
||||| |||||
Sbjct 79577085 TTGCAACTGGTA 79577096
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728
||| || |||||| | |||| || || || || |||| ||||| || ||||| || ||
Sbjct 79577795 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATCGATTGTCCTTT 79577854
Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788
|| ||||||| ||| ||| || || ||||| |||| || || || || ||||||||
Sbjct 79577855 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 79577914
Query 58789 TAACTTCTATTTTAGAACATACAAG 58813
||||||||| | | | ||||| |||
Sbjct 79577915 TAACTTCTACTATCGGACATATAAG 79577939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903146105276000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |