Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3140 138 2e-27 seq2929 138 2e-27 >seq3140 Length=8478 Score = 138 bits (152), Expect = 2e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | || ||||| || |||||| |||||||||| || ||||| Sbjct 7931 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTCTTCTTCATC 7990 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| ||||| || || |||| ||||| || || ||||| ||||| || ||||| Sbjct 7991 CTGAGGAAGAAGTTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 8050 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||| | ||| | |||||||| ||| ||||||| || || Sbjct 8051 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 8091 >seq2929 Length=111302122 Score = 138 bits (152), Expect = 2e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | || ||||| || |||||| |||||||||| || ||||| Sbjct 79575007 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTCTTCTTCATC 79575066 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| ||||| || || |||| ||||| || || ||||| ||||| || ||||| Sbjct 79575067 CTGAGGAAGAAGTTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 79575126 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||| | ||| | |||||||| ||| ||||||| || || Sbjct 79575127 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 79575167 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || ||||| || |||||| ||||| | ||||| |||||||||||||| | ||||| || Sbjct 79576965 GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTTATTATGTACATGTATTACGGA 79577024 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | || || | |||||| | |||||||| || ||| | |||||| Sbjct 79577025 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAGTATCTGTGGTGGAAACGATACTTGACTATA 79577084 Query 58661 ATGCAATTGGTA 58672 ||||| ||||| Sbjct 79577085 TTGCAACTGGTA 79577096 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 79577795 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATCGATTGTCCTTT 79577854 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| |||| || || || || |||||||| Sbjct 79577855 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 79577914 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||| | | | ||||| ||| Sbjct 79577915 TAACTTCTACTATCGGACATATAAG 79577939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903146105276000