Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq6642 145 7e-30
seq6387 132 5e-26
seq1 109 5e-19
>seq6642
Length=9979828
Score = 145 bits (160), Expect = 7e-30
Identities = 157/208 (75%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||| ||||| || ||||| || || ||| | ||| || |||||
Sbjct 6586836 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 6586777
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| || |||| |||| |||||| || ||||| |||||||| ||||| ||||||
Sbjct 6586776 CTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTT 6586717
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||
Sbjct 6586716 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 6586657
Query 133637 CAGAGTTTTTACGAAAATCTGCATGGCT 133664
||| || || ||||| ||||||||| ||
Sbjct 6586656 CAGGGTCTTCACGAAGATCTGCATGCCT 6586629
Score = 140 bits (154), Expect = 3e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||| ||||| || ||||| || || ||| | ||| || |||||
Sbjct 6586152 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 6586093
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| || | || | || |||||| |||||||| |||||||||||||| ||||||
Sbjct 6586092 CTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTT 6586033
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||
Sbjct 6586032 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 6585973
Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661
||| || || || || |||||||||
Sbjct 6585972 CAGGGTCTTCACAAAGATCTGCATG 6585948
Score = 138 bits (152), Expect = 1e-27
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||||||||| || ||||| || || ||| | ||| || |||||
Sbjct 6586608 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 6586549
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| || | || | || |||||| |||||||| |||||||| ||||| ||||||
Sbjct 6586548 CTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTT 6586489
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | |||| ||||| ||||||| || |||| ||||| ||| ||||| ||
Sbjct 6586488 GGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 6586429
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| ||||| ||||||||
Sbjct 6586428 CAAGGTTTTCACGAAGATCTGCAT 6586405
>seq6387
Length=12762846
Score = 132 bits (146), Expect = 5e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || ||||| ||| || ||| | ||| || |||||||||||
Sbjct 4540152 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 4540093
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || |||| |||||| ||||| || ||||| |||||||| |||||| ||||
Sbjct 4540092 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 4540033
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||| | || || |||| ||||| || | ||||| ||| ||||| || || ||
Sbjct 4540032 ACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTC 4539973
Query 133644 TTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 4539972 TTCACGAAGATCTGCATG 4539955
Score = 127 bits (140), Expect = 2e-24
Identities = 151/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||| ||||| || ||||| ||| || ||| | || || |||||
Sbjct 4540387 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCCAGCTG 4540328
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| || | || |||| |||||| ||||| || ||||| |||||||| ||||||
Sbjct 4540327 CTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 4540268
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||
Sbjct 4540267 GGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGT 4540208
Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661
|| || || || || |||||||||
Sbjct 4540207 CAAGGTCTTCACAAAGATCTGCATG 4540183
Score = 118 bits (130), Expect = 1e-21
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| || || ||| | | | || || ||||||||||
Sbjct 4540609 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 4540551
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||| ||| || ||||| || ||||| |||||||| |||||| ||
Sbjct 4540550 CAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 4540491
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | ||||| |||||| |||| ||||| || | ||||| ||| ||||| |||| |
Sbjct 4540490 TCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGG 4540431
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 4540430 TCTTCACAAAGATCTGCAT 4540412
>seq1
Length=196202544
Score = 109 bits (120), Expect = 5e-19
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925
||||| || || || | ||||||||||||||||||||| |||| ||||| ||||||
Sbjct 194683622 TACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 194683681
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975
||||| |||||||| | ||| |||||||||||||| ||| |||||| ||
Sbjct 194683682 CTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCAGTCTC 194683731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483278946209000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |