Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6642 145 7e-30 seq6387 132 5e-26 seq1 109 5e-19 >seq6642 Length=9979828 Score = 145 bits (160), Expect = 7e-30 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || || ||| | ||| || ||||| Sbjct 6586836 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 6586777 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || |||| |||| |||||| || ||||| |||||||| ||||| |||||| Sbjct 6586776 CTTGCCAGCAAAAATCAGCCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGGATCTT 6586717 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| || Sbjct 6586716 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 6586657 Query 133637 CAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||| || || ||||| ||||||||| || Sbjct 6586656 CAGGGTCTTCACGAAGATCTGCATGCCT 6586629 Score = 140 bits (154), Expect = 3e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || || ||| | ||| || ||||| Sbjct 6586152 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 6586093 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | || |||||| |||||||| |||||||||||||| |||||| Sbjct 6586092 CTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTT 6586033 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||| || Sbjct 6586032 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 6585973 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 6585972 CAGGGTCTTCACAAAGATCTGCATG 6585948 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||||||||| || ||||| || || ||| | ||| || ||||| Sbjct 6586608 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 6586549 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | || |||||| |||||||| |||||||| ||||| |||||| Sbjct 6586548 CTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTT 6586489 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | |||| ||||| ||||||| || |||| ||||| ||| ||||| || Sbjct 6586488 GGCCTTCACATTTTCAATTGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 6586429 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| |||||||| Sbjct 6586428 CAAGGTTTTCACGAAGATCTGCAT 6586405 >seq6387 Length=12762846 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| | ||| || ||||||||||| Sbjct 4540152 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 4540093 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| |||||| ||||| || ||||| |||||||| |||||| |||| Sbjct 4540092 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 4540033 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | || || |||| ||||| || | ||||| ||| ||||| || || || Sbjct 4540032 ACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTC 4539973 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 4539972 TTCACGAAGATCTGCATG 4539955 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| ||| || ||| | || || ||||| Sbjct 4540387 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCCAGCTG 4540328 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| ||||| || ||||| |||||||| |||||| Sbjct 4540327 CTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 4540268 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 4540267 GGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGT 4540208 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || ||||||||| Sbjct 4540207 CAAGGTCTTCACAAAGATCTGCATG 4540183 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 4540609 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 4540551 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||| || ||||| || ||||| |||||||| |||||| || Sbjct 4540550 CAGCAAAGATCAGCCTCTGTTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCT 4540491 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| |||| ||||| || | ||||| ||| ||||| |||| | Sbjct 4540490 TCACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGG 4540431 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 4540430 TCTTCACAAAGATCTGCAT 4540412 >seq1 Length=196202544 Score = 109 bits (120), Expect = 5e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | ||||||||||||||||||||| |||| ||||| |||||| Sbjct 194683622 TACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 194683681 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||| |||||||| | ||| |||||||||||||| ||| |||||| || Sbjct 194683682 CTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCAGTCTC 194683731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483278946209000